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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa0714 and SMa0715 are separated by 1 nucleotides
SMa0715 and SMa0717 overlap by 22 nucleotides
SMa0717 and SMa0719 are separated by 57 nucleotides
SMa0719 and SMa0722 are separated by 98 nucleotides
SMa0714: SMa0714 - ABC transporter ATP-binding protein, at 387,807 to 388,304
SMa0714
SMa0715: SMa0715 - Nucleoside-diphosphate-sugar epimerase, at 388,306 to 389,286
SMa0715
SMa0717: SMa0717 - hypothetical protein, at 389,265 to 390,974
SMa0717
SMa0719: SMa0719 - short-chain alcohol dehydrogenase, at 391,032 to 391,751
SMa0719
SMa0722: SMa0722 - transposase, at 391,850 to 392,461
SMa0722
Group
Condition
SMa0714
SMa0715
SMa0717
SMa0719
SMa0722
stress
copper (II) chloride 1 mM
-1.4
-0.5
+0.0
-0.9
-0.0
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.3
-0.0
-0.4
-0.7
-0.7
nitrogen source
L-Asparagine (N)
-0.2
-0.7
-0.0
-1.0
-0.2
carbon source
Beta-Lactose (C)
-0.7
-0.2
-0.7
-0.1
-0.1
stress
Cisplatin 0.0005 mg/ml
-0.5
-0.3
-0.2
-0.6
-0.0
nutrient
Min media with glucose
-1.1
-0.1
-0.3
-0.4
+0.3
carbon source
Lactulose (C)
-0.4
-0.1
-0.9
-0.1
+0.0
carbon source
Lactitol (C)
+0.2
-0.3
-1.1
-0.2
-0.1
stress
Nickel (II) chloride 1 mM
-0.3
-0.2
-0.8
+0.1
-0.1
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
-0.3
-0.2
-0.7
+0.2
-0.1
carbon source
Lactulose (C)
-0.6
-0.1
-0.7
+0.1
+0.1
carbon source
D-Salicin (C)
-0.1
-0.2
-1.1
+0.4
-0.1
carbon source
D-Glucose (C)
-0.4
-0.2
-0.4
-0.3
+0.2
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
+0.3
-0.3
-0.8
+0.1
-0.1
carbon source
Methyl beta-D-glucopyranoside (C)
+0.0
-0.1
-1.1
+0.4
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.6
-0.3
-0.3
-0.6
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
-0.6
+0.2
+0.1
-0.5
carbon source
Lactitol (C)
+0.1
-0.1
-0.8
+0.4
+0.1
stress
3-octanone 2.655166667 mM
+0.4
-0.4
+0.3
-0.4
-0.1
carbon source
D-Mannose (C)
+0.5
-0.2
-0.3
-0.2
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.4
+0.5
-0.0
-0.8
-0.0
nitrogen source
Cytosine (N)
+0.6
+0.1
+0.2
-0.6
-0.1
carbon source
Xylobiose (C)
+0.4
-0.1
-0.8
+0.4
+0.3
stress
Aluminum chloride
+0.6
-0.1
+0.0
+0.2
-0.5
nitrogen source
L-Histidine (N)
+0.7
-0.2
-0.4
+0.3
+0.0
nitrogen source
L-Glutamine (N)
+1.0
+0.2
-0.2
-0.5
-0.1
nitrogen source
nitrate (N)
+1.2
-0.1
-0.4
+0.0
-0.0
nitrogen source
Gelatin (N)
+1.0
+0.1
-0.3
-0.0
-0.1
nitrogen source
L-Arginine (N)
+0.9
-0.0
-0.5
+0.2
+0.2
nitrogen source
L-Leucine (N)
+0.9
+0.3
-0.2
+0.2
-0.3
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