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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa0592 and SMa0594 overlap by 25 nucleotides
SMa0594 and SMa0599 are separated by 618 nucleotides
SMa0599 and SMa0601 are separated by 143 nucleotides
SMa0601 and SMa0604 are separated by 621 nucleotides
SMa0592: SMa0592 - hypothetical protein, at 315,280 to 316,452
SMa0592
SMa0594: SMa0594 - hypothetical protein, at 316,428 to 317,459
SMa0594
SMa0599: SMa0599 - hypothetical protein, at 318,078 to 319,409
SMa0599
SMa0601: SMa0601 - hypothetical protein, at 319,553 to 321,799
SMa0601
SMa0604: SMa0604 - hypothetical protein, at 322,421 to 323,233
SMa0604
Group
Condition
SMa0592
SMa0594
SMa0599
SMa0601
SMa0604
stress
copper (II) chloride 1 mM
+0.0
N.D.
-0.3
-0.4
-0.7
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.2
N.D.
-0.2
-0.2
-0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.0
N.D.
-0.4
-0.1
-0.3
nitrogen source
L-Arginine (N)
-0.2
N.D.
-0.2
-0.3
-0.1
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
-0.4
N.D.
-0.1
-0.0
-0.3
stress
Nickel (II) chloride 1 mM
+0.1
N.D.
-0.2
-0.0
-0.5
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
-0.1
N.D.
+0.0
-0.1
-0.5
nitrogen source
L-Histidine (N)
+0.2
N.D.
-0.5
-0.3
-0.1
stress
Chlorite 0.1 mM
+0.1
N.D.
-0.3
-0.1
-0.2
carbon source
L-Glutamine (C)
-0.1
N.D.
+0.3
-0.3
-0.3
nitrogen source
L-Leucine (N)
-0.2
N.D.
-0.5
-0.1
+0.5
nutrient
L-Histidine
-0.1
N.D.
-0.3
-0.2
+0.1
carbon source
L-Histidine (C)
-0.2
N.D.
+0.4
-0.5
-0.1
nitrogen source
L-Asparagine (N)
+0.4
N.D.
-0.5
+0.3
-0.5
stress
Paraquat dichloride 0.3 mg/ml
+0.2
N.D.
+0.0
-0.2
-0.3
stress
nitrate 40 mM
-0.1
N.D.
+0.2
+0.0
-0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.3
N.D.
+0.2
+0.1
-0.3
stress
D-Cycloserine 0.05 mg/ml
+0.3
N.D.
-0.0
-0.2
-0.3
stress
Aluminum chloride
+0.4
N.D.
-0.1
-0.4
-0.1
carbon source
Lactitol (C)
-0.3
N.D.
+0.3
-0.2
-0.1
stress
Paraquat dichloride 0.2 mg/ml
+0.1
N.D.
-0.1
-0.2
+0.2
pH
LB, pH6
-0.1
N.D.
+0.4
-0.3
+0.1
nitrogen source
Cytosine (N)
+0.4
N.D.
-0.4
+0.0
+0.1
nutrient
Min media with glucose
+0.1
N.D.
-0.2
-0.2
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
N.D.
+0.1
-0.2
+0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
N.D.
+0.2
-0.1
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
N.D.
+0.5
+0.1
+0.1
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.1
N.D.
+0.1
+0.2
+0.4
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.1
N.D.
+0.3
+0.2
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.0
N.D.
+0.1
+0.2
+0.4
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