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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa0570 and SMa0572 are separated by 790 nucleotides
SMa0572 and SMa0574 are separated by 247 nucleotides
SMa0574 and SMa0575 are separated by 50 nucleotides
SMa0575 and SMa0576 are separated by 68 nucleotides
SMa0570: SMa0570 - CyaF4 adenylate cyclase, at 301,877 to 303,766
SMa0570
SMa0572: SMa0572 - hypothetical protein, at 304,557 to 304,880
SMa0572
SMa0574: SMa0574 - hypothetical protein, at 305,128 to 305,841
SMa0574
SMa0575: SMa0575 - hypothetical protein, at 305,892 to 306,179
SMa0575
SMa0576: SMa0576 - Leu or Leu/Val/Ile transport binding protein, at 306,248 to 307,339
SMa0576
Group
Condition
SMa0570
SMa0572
SMa0574
SMa0575
SMa0576
nitrogen source
L-Arginine (N)
-0.0
+0.1
+0.1
-1.4
-0.6
nitrogen source
nitrate (N)
+0.1
-0.1
-0.1
-1.4
-0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
+0.1
-0.2
-1.4
+0.1
nitrogen source
Cytosine (N)
+0.1
-0.1
-0.6
-0.7
-0.1
stress
Sisomicin 0.004 mg/ml
-0.1
+0.1
-0.0
-1.1
-0.1
stress
Cisplatin 0.001 mg/ml
-0.2
-0.1
+0.1
-0.8
-0.2
stress
Paraquat dichloride 0.3 mg/ml
-0.3
+0.4
+0.1
-0.9
-0.1
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.0
+0.2
-0.1
-0.4
-0.6
carbon source
Methyl beta-D-glucopyranoside (C)
-0.1
+0.4
-0.3
-0.5
-0.3
stress
copper (II) chloride 1 mM
-0.2
+0.2
-0.0
-0.8
+0.1
stress
3-octanone 0.456 mM
+0.1
-0.2
+0.2
-0.6
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.4
+0.1
+0.3
-0.9
+0.2
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.1
-0.5
+0.2
-0.5
+0.0
stress
Paraquat dichloride 0.05 mg/ml
+0.0
+0.2
+0.2
-0.7
-0.2
nitrogen source
L-Leucine (N)
-0.1
+0.4
-0.7
-0.2
+0.1
nitrogen source
Gly-DL-Asp (N)
+0.1
+0.5
-0.0
-0.8
-0.1
carbon source
D-Trehalose (C)
+0.1
+0.3
-0.3
-0.6
+0.3
stress
1-octen-3-ol 0.5427293333 mM
+0.1
-0.4
+0.2
-0.3
+0.3
nitrogen source
L-Glutamine (N)
+0.3
+0.1
+0.1
-0.7
+0.0
stress
perchlorate 10 mM
-0.1
+0.5
-0.3
-0.4
+0.2
stress
Chlorite 0.1 mM
+0.2
+0.4
+0.0
-0.7
+0.0
nitrogen source
Gelatin (N)
-0.0
+0.4
-0.0
-0.6
+0.3
carbon source
D-Glucose (C)
+0.1
+0.4
+0.0
-0.6
+0.2
lb
LB
-0.1
+0.5
+0.3
-0.3
+0.0
carbon source
D-Ribose (C)
+0.3
+0.3
+0.3
-0.5
+0.1
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.2
-0.3
+0.3
+0.5
+0.1
pH
LB, pH8
-0.2
+0.5
+0.2
+0.3
+0.2
r2a control
R2A control for volatile experiments
+0.3
+0.2
+0.6
-0.5
+0.2
carbon source
5-Aminovaleric (C)
+0.1
-0.2
-0.0
+0.9
+0.1
stress
1-octen-3-ol 0.5427293333 mM
+0.2
+0.2
+0.4
+0.4
+0.2
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