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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa5026 and SMa0567 are separated by 153 nucleotides
SMa0567 and SMa0570 are separated by 115 nucleotides
SMa0570 and SMa0572 are separated by 790 nucleotides
SMa0572 and SMa0574 are separated by 247 nucleotides
SMa5026: SMa5026 - hypothetical protein, at 300,571 to 301,050
SMa5026
SMa0567: SMa0567 - hypothetical protein, at 301,204 to 301,761
SMa0567
SMa0570: SMa0570 - CyaF4 adenylate cyclase, at 301,877 to 303,766
SMa0570
SMa0572: SMa0572 - hypothetical protein, at 304,557 to 304,880
SMa0572
SMa0574: SMa0574 - hypothetical protein, at 305,128 to 305,841
SMa0574
Group
Condition
SMa5026
SMa0567
SMa0570
SMa0572
SMa0574
stress
copper (II) chloride 1 mM
-1.0
-0.5
-0.2
+0.2
-0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
-0.8
+0.1
-0.2
-0.1
nitrogen source
Cytosine (N)
+0.3
-0.3
+0.1
-0.1
-0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
-0.5
-0.4
+0.1
+0.3
r2a control
R2A control
-0.4
-0.5
+0.1
+0.3
+0.1
nitrogen source
L-Leucine (N)
-0.2
+0.2
-0.1
+0.4
-0.7
stress
Paraquat dichloride 0.3 mg/ml
-0.2
-0.3
-0.3
+0.4
+0.1
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
+0.1
-0.6
+0.0
-0.2
+0.4
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.4
-0.7
+0.3
-0.1
-0.1
stress
Chlorite 0.1 mM
-0.2
-0.6
+0.2
+0.4
+0.0
lb no stress control
LB no stress control
+0.2
+0.3
+0.0
-0.3
-0.4
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.2
-0.4
+0.2
-0.1
+0.4
pH
LB, pH7
-0.1
-0.1
-0.3
+0.4
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.5
-0.6
+0.1
+0.1
+0.1
stress
1-octen-3-ol 0.5427293333 mM
-0.1
-0.6
+0.2
+0.2
+0.4
stress
3-octanone 2.655166667 mM
-0.1
+0.5
+0.1
-0.5
+0.0
pH
LB, pH6
+0.3
-0.3
-0.2
+0.1
+0.3
temperature
LB, 23C
+0.4
-0.3
-0.3
+0.4
+0.3
temperature
LB, 23C
+0.3
-0.2
-0.1
+0.4
+0.2
carbon source
D-Ribose (C)
-0.3
+0.2
+0.3
+0.3
+0.3
stress
D-Cycloserine 0.05 mg/ml
+0.6
+0.1
-0.2
+0.4
+0.0
r2a control
R2A control for volatile experiments
-0.1
-0.0
+0.3
+0.2
+0.6
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.2
+0.1
-0.1
+0.4
+0.4
lb
LB
+0.5
-0.2
-0.1
+0.5
+0.3
stress
perchlorate 10 mM
+0.9
-0.1
-0.1
+0.5
-0.3
carbon source
D-Leucrose (C)
+0.4
+0.4
+0.1
+0.3
-0.0
lb
LB
+0.6
+0.1
-0.1
+0.5
+0.1
r2a control
R2A control for volatile experiments
+0.4
+0.2
+0.3
+0.0
+0.2
carbon source
Lactitol (C)
+0.1
+0.2
+0.1
+0.6
+0.2
pH
LB, pH8
+0.7
+0.3
-0.2
+0.5
+0.2
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