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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa0403 and SMa0404 are separated by 1 nucleotides
SMa0404 and SMa0405 are separated by 352 nucleotides
SMa0405 and SMa0407 are separated by 352 nucleotides
SMa0407 and SMa0412 are separated by 994 nucleotides
SMa0403: SMa0403 - hypothetical protein, at 218,550 to 219,938
SMa0403
SMa0404: SMa0404 - FMN-dependent dehydrogenase, at 219,940 to 221,085
SMa0404
SMa0405: SMa0405 - transposase, fragment, at 221,438 to 221,725
SMa0405
SMa0407: SMa0407 - hypothetical protein, at 222,078 to 222,866
SMa0407
SMa0412: SMa0412 - hypothetical protein, at 223,861 to 224,175
SMa0412
Group
Condition
SMa0403
SMa0404
SMa0405
SMa0407
SMa0412
stress
Paraquat dichloride 0.3 mg/ml
-0.5
-0.3
+0.1
-0.3
-0.4
stress
perchlorate 10 mM
-0.1
-0.2
-0.3
-0.0
-0.8
stress
Paraquat dichloride 0.2 mg/ml
-0.0
-0.4
+0.0
-0.2
-0.7
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.5
-0.5
-0.3
-0.3
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.0
-0.5
-0.2
+0.1
-0.6
stress
Cisplatin 0.0005 mg/ml
-0.0
-0.4
+0.0
+0.2
-0.9
pH
LB, pH8
-0.1
-0.4
-0.0
-0.1
-0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
-0.3
-0.8
-0.3
+0.2
stress
Cisplatin 0.001 mg/ml
-0.4
-0.3
+0.3
+0.5
-1.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.0
-0.3
-0.8
-0.3
+0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
-0.3
-0.5
+0.0
+0.3
nitrogen source
L-Arginine (N)
-0.5
-0.1
+0.3
-0.3
-0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
-0.2
-0.4
-0.2
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
-0.4
-0.3
-0.2
+0.5
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.2
+0.3
+0.2
-0.2
-0.5
stress
Nickel (II) chloride 1 mM
-0.3
-0.2
-0.1
-0.2
+0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.4
+0.2
-0.1
-0.4
+0.6
pH
LB, pH7
-0.0
-0.2
+0.3
+0.2
-0.4
lb no stress control
LB no stress control
+0.1
+0.1
-0.7
+0.4
+0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
-0.4
-0.3
+0.1
+0.3
nitrogen source
nitrate (N)
-0.2
-0.2
-0.1
-0.2
+0.6
carbon source
methyl-beta-D-xylopyranoside (C)
+0.4
-0.0
-0.1
+0.2
-0.4
carbon source
methyl-beta-D-xylopyranoside (C)
+0.3
+0.1
+0.6
-0.0
-0.9
stress
Paraquat dichloride 0.2 mg/ml
+0.1
-0.1
-0.5
+0.3
+0.4
nitrogen source
L-Asparagine (N)
-0.4
+0.3
+0.2
+0.6
-0.5
r2a control
R2A control
-0.1
-0.4
+0.5
+0.4
+0.1
nitrogen source
Uridine (N)
-0.3
-0.1
+0.7
+0.4
+0.0
stress
3-octanone 0.456 mM
+0.3
+0.3
-0.3
+0.4
+0.1
r2a control
R2A control
-0.2
+0.1
+0.3
+0.6
+0.2
carbon source
Xylobiose (C)
+0.3
-0.2
+0.5
+0.1
+0.4
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