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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa0293 and SMa0298 are separated by 372 nucleotides
SMa0298 and SMa0299 are separated by 2 nucleotides
SMa0299 and SMa0300 overlap by 4 nucleotides
SMa0300 and SMa0301 overlap by 4 nucleotides
SMa0293: SMa0293 - hypothetical protein, at 162,273 to 162,668
SMa0293
SMa0298: SMa0298 - ABC transporter ATP-binding protein, at 163,041 to 164,855
SMa0298
SMa0299: SMa0299 - ABC transporter permease, at 164,858 to 165,745
SMa0299
SMa0300: SMa0300 - ABC transporter permease, at 165,742 to 166,695
SMa0300
SMa0301: SMa0301 - hypothetical protein, at 166,692 to 167,360
SMa0301
Group
Condition
SMa0293
SMa0298
SMa0299
SMa0300
SMa0301
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.4
-0.3
-0.6
-0.2
-0.0
nitrogen source
L-Histidine (N)
+0.2
+0.0
-0.9
-0.6
-0.2
nitrogen source
Uridine (N)
-0.6
-0.1
-0.1
-0.4
-0.1
stress
Aluminum chloride
-0.6
-0.2
-0.2
+0.1
-0.3
nitrogen source
Gly-DL-Asp (N)
-0.4
-0.3
-0.3
-0.5
+0.3
carbon source
D-Glucose (C)
-0.8
-0.2
+0.0
-0.2
+0.0
nitrogen source
L-Arginine (N)
-0.7
+0.2
-0.5
-0.2
+0.2
nitrogen source
L-Asparagine (N)
-0.2
+0.1
-0.4
-0.6
+0.2
nitrogen source
Cytosine (N)
-0.7
-0.2
-0.0
-0.1
+0.2
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.4
-0.4
-0.1
+0.3
-0.1
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
-0.6
+0.0
-0.2
+0.3
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.0
-0.3
-0.5
-0.4
+0.8
nitrogen source
L-Leucine (N)
-0.2
+0.3
-0.2
-0.4
+0.3
carbon source
pipercolic (C)
-0.6
-0.0
+0.2
-0.1
+0.2
stress
Chlorite 0.1 mM
-0.1
-0.5
-0.1
+0.4
+0.1
carbon source
5-Aminovaleric (C)
-0.6
-0.1
-0.0
+0.1
+0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.6
-0.1
+0.2
+0.2
+0.2
r2a control
R2A control
-0.1
-0.3
-0.2
+0.1
+0.4
nutrient
Min media with glucose
-0.5
-0.1
+0.2
+0.1
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.1
-0.3
+0.0
+0.7
-0.3
stress
Cisplatin 0.001 mg/ml
+0.8
+0.1
-0.4
+0.1
-0.2
stress
Thallium(I) acetate 0.001 mg/ml
-0.2
+0.2
+0.3
+0.3
-0.2
r2a control
R2A control for volatile experiments
+0.9
-0.1
+0.0
-0.0
-0.3
r2a control
R2A control for volatile experiments
+1.1
-0.2
+0.1
-0.4
+0.0
r2a control
R2A control for volatile experiments
+1.1
-0.2
-0.2
+0.0
-0.1
stress
Paraquat dichloride 0.3 mg/ml
-0.0
+0.2
+0.2
+0.7
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
+0.0
-0.2
+0.4
+0.8
r2a control
R2A control for volatile experiments
+0.9
-0.1
-0.2
+0.2
+0.5
r2a control
R2A control for volatile experiments
+1.1
+0.1
+0.0
+0.2
+0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
+0.1
+0.1
+0.5
+0.5
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