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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa0279 and SMa0280 are separated by 145 nucleotides
SMa0280 and SMa0281 are separated by 54 nucleotides
SMa0281 and SMa0285 are separated by 360 nucleotides
SMa0285 and SMa0286 are separated by 200 nucleotides
SMa0279: SMa0279 - hypothetical protein, at 156,800 to 157,411
SMa0279
SMa0280: SMa0280 - hypothetical protein, at 157,557 to 158,345
SMa0280
SMa0281: SMa0281 - MerR family transcriptional regulator, at 158,400 to 158,804
SMa0281
SMa0285: SMa0285 - hypothetical protein, at 159,165 to 159,389
SMa0285
SMa0286: SMa0286 - hypothetical protein, at 159,590 to 160,051
SMa0286
Group
Condition
SMa0279
SMa0280
SMa0281
SMa0285
SMa0286
stress
3-octanone 5.310333333 mM
-0.8
+0.0
-0.6
N.D.
-1.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.6
+0.1
-1.2
N.D.
-0.2
stress
Nickel (II) chloride 1 mM
-0.5
-0.2
-0.3
N.D.
-0.8
lb no stress control
LB no stress control
-0.6
+0.1
-0.2
N.D.
-1.1
r2a control
R2A control for volatile experiments
-0.1
-0.3
-0.8
N.D.
-0.4
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
+0.5
-0.3
-0.6
N.D.
-1.1
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.1
-0.2
-0.5
N.D.
-0.8
stress
copper (II) chloride 1 mM
+0.0
+0.1
+0.5
N.D.
-1.9
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.4
+0.2
-0.9
N.D.
-0.7
carbon source
L-Lysine (C)
-0.8
+0.2
+0.1
N.D.
-0.5
carbon source
D-Glucose (C)
-0.3
-0.2
+0.4
N.D.
-0.9
carbon source
acetate (C)
-0.1
+0.1
+0.3
N.D.
-1.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-1.4
-0.5
+1.2
N.D.
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
-0.2
+0.7
N.D.
-0.9
carbon source
Methyl beta-D-glucopyranoside (C)
-0.5
+0.0
-0.5
N.D.
+0.6
pH
LB, pH6
+0.6
-0.1
-0.1
N.D.
-0.8
stress
Cisplatin 0.001 mg/ml
-0.5
-0.1
-0.3
N.D.
+0.9
carbon source
L-Alanine (C)
+0.6
+0.1
+0.1
N.D.
-0.7
nitrogen source
L-Leucine (N)
-0.4
+0.2
-0.2
N.D.
+0.9
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.4
+0.3
-0.5
N.D.
+0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
-0.5
+0.8
N.D.
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
-0.2
+1.1
N.D.
-0.2
nutrient
Min media with glucose
+0.8
-0.3
+0.5
N.D.
-0.2
stress
Chlorite 0.1 mM
-0.2
+0.0
-0.3
N.D.
+1.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.4
-0.3
+0.3
N.D.
+1.0
stress
D-Cycloserine 0.05 mg/ml
-0.2
+0.4
+0.5
N.D.
+0.7
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.3
+0.1
-0.1
N.D.
+1.4
nitrogen source
L-Glutamine (N)
+0.2
+0.3
+0.3
N.D.
+0.9
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.7
+0.1
+0.1
N.D.
+0.9
stress
Aluminum chloride
+0.5
-0.1
+0.4
N.D.
+1.3
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