Fitness for 5 genes in Sinorhizobium meliloti 1021

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500 ntSMa0244 and SMa0246 are separated by 14 nucleotidesSMa0246 and SMa0247 are separated by 170 nucleotidesSMa0247 and SMa0249 are separated by 0 nucleotidesSMa0249 and SMa0250 overlap by 1 nucleotides SMa0244: SMa0244 - Dehydrogenase, FAD-dependent, at 134,949 to 136,394 SMa0244 SMa0246: SMa0246 - GntR family transcriptional regulator, at 136,409 to 137,119 SMa0246 SMa0247: SMa0247 - 2-dehydro-3-deoxy-D-arabinonate dehydratase, 2,4-dioxopentanoate forming (from data), at 137,290 to 138,486 SMa0247 SMa0249: SMa0249 - TRAP-type small permease component, at 138,487 to 139,020 SMa0249 SMa0250: SMa0250 - dedA-like protein, at 139,020 to 140,297 SMa0250
Group Condition SMa0244 SMa0246 SMa0247 SMa0249 SMa0250
carbon source D-Arabinose (C) +0.4 +1.0 -5.0 -0.7 -0.1
nitrogen source Uridine (N) -0.4 +0.0 -0.2 -1.7 -0.3
nitrogen source NAG (N) -1.0 -0.9 +0.1 -0.6 +0.1
nitrogen source L-Arginine (N) -0.6 -1.0 +0.1 -0.1 +0.2
stress Paraquat dichloride 0.2 mg/ml -0.0 -0.4 +0.0 -0.9 +0.1
lb LB -0.3 -0.0 -0.1 -1.0 +0.3
pH LB, pH6 +0.2 +0.5 -0.8 -1.1 -0.1
carbon source L-Lysine (C) -0.5 +0.0 +0.1 -0.7 +0.1
carbon source Protocatechuic Acid (C) -0.4 -0.2 +0.2 -0.6 +0.1
carbon source D-Maltose (C) -0.3 +0.2 -0.3 -0.6 +0.1
nitrogen source L-Histidine (N) -0.3 +0.3 -0.3 -0.5 -0.1
carbon source Uridine (C) +0.1 +0.3 -0.3 -0.3 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 +0.1 -0.0 -0.8 -0.2
carbon source D-Xylose (C) +0.4 +0.0 -0.2 -0.6 -0.1
r2a control R2A control for volatile experiments +0.4 -0.1 -0.1 -0.8 +0.0
nitrogen source D-Glucosamine Hydrochloride (N) +0.0 +0.5 -0.1 -0.8 +0.2
stress Fusidic 0.0001 mg/ml -0.2 -0.7 +0.2 +0.3 +0.1
stress Thallium(I) acetate 0.001 mg/ml +0.3 -0.5 -0.3 +0.0 +0.2
stress Thallium(I) acetate 0.0025 mg/ml -0.5 -0.6 +0.1 +0.5 +0.3
stress Nickel (II) chloride 1 mM -0.3 -0.3 +0.4 -0.2 +0.2
nitrogen source L-Asparagine (N) +0.5 +0.2 -0.2 -0.5 -0.1
stress Paraquat dichloride 0.2 mg/ml +0.4 -0.4 -0.3 +0.5 -0.0
nitrogen source Cytosine (N) +0.2 +0.6 +0.1 -0.4 -0.2
carbon source D-Glucose (C) +0.7 +0.5 -0.3 -0.3 -0.1
carbon source D-Glucose (C) +0.3 +0.6 -0.2 -0.0 -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 +0.3 +0.0 +0.7 +0.0
stress Polymyxin B sulfate 0.00005 mg/ml +0.5 +0.1 -0.0 +0.6 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 +0.3 -0.1 +1.1 +0.3
nitrogen source nitrate (N) +0.5 +1.0 +0.2 -0.1 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +0.1 +0.3 +0.6 +0.2
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