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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa0229 and SMa0232 are separated by 219 nucleotides
SMa0232 and SMa0233 are separated by 21 nucleotides
SMa0233 and SMa0235 are separated by 414 nucleotides
SMa0235 and SMa0237 are separated by 8 nucleotides
SMa0229: SMa0229 - hypothetical protein, at 128,085 to 128,507
SMa0229
SMa0232: SMa0232 - hypothetical protein, at 128,727 to 129,278
SMa0232
SMa0233: SMa0233 - OtsA trehalose-6-phosphate synthase, at 129,300 to 130,691
SMa0233
SMa0235: SMa0235 - dihydroxy-acid dehydratase, at 131,106 to 132,884
SMa0235
SMa0237: SMa0237 - dehydrogenase, at 132,893 to 133,774
SMa0237
Group
Condition
SMa0229
SMa0232
SMa0233
SMa0235
SMa0237
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
-1.4
+0.0
+0.0
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.3
-0.9
-0.1
-0.3
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
-0.4
-0.1
-0.4
-0.4
stress
Nickel (II) chloride 1 mM
+0.0
-1.2
-0.0
-0.3
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.0
-0.7
-0.1
-0.3
-0.3
stress
Thallium(I) acetate 0.0025 mg/ml
+0.0
-0.1
-0.1
-0.4
-0.7
carbon source
m-Inositol (C)
-0.3
-0.7
+0.1
-0.0
-0.3
stress
Paraquat dichloride 0.3 mg/ml
-0.4
-0.8
-0.2
-0.0
+0.2
carbon source
Fumarate (C)
-0.2
-0.4
-0.1
-0.3
-0.2
carbon source
Uridine (C)
+0.0
-0.6
+0.1
-0.1
-0.5
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.2
-0.4
-0.4
+0.2
-0.0
stress
Cisplatin 0.0005 mg/ml
+0.1
-1.1
-0.1
+0.1
+0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
-0.7
+0.1
-0.4
+0.3
carbon source
acetate (C)
-0.3
-0.4
-0.0
+0.2
-0.2
stress
Sisomicin 0.004 mg/ml
-0.3
+0.3
+0.0
-0.1
-0.5
nitrogen source
L-Histidine (N)
+0.0
-0.6
+0.1
-0.4
+0.3
carbon source
D-Mannitol (C)
-0.1
-0.8
+0.1
+0.1
+0.2
nitrogen source
L-Leucine (N)
-0.3
+0.3
+0.0
-0.5
+0.1
nitrogen source
L-Asparagine (N)
+0.2
+0.3
-0.0
+0.1
-0.9
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
-0.6
+0.1
+0.2
-0.1
carbon source
Protocatechuic Acid (C)
-0.2
+0.3
-0.1
-0.3
+0.3
nitrogen source
L-Arginine (N)
-0.4
+0.2
+0.1
+0.3
-0.1
r2a control
R2A control
+0.2
-0.2
-0.0
+0.4
-0.3
pH
LB, pH6
+0.0
-0.4
-0.1
+0.8
-0.0
stress
copper (II) chloride 1 mM
-0.8
+0.6
-0.1
+0.7
-0.1
carbon source
L-Lysine (C)
-0.2
-0.2
+0.2
+0.2
+0.4
stress
1-octen-3-ol 0.5427293333 mM
-0.2
+0.4
+0.0
+0.2
+0.3
stress
3-octanone 0.456 mM
-0.1
+0.4
+0.1
+0.1
+0.5
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.2
+0.6
+0.1
+0.3
-0.1
stress
Aluminum chloride
+0.4
+0.1
-0.0
+0.4
+0.3
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