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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa0228 and SMa0229 are separated by 318 nucleotides
SMa0229 and SMa0232 are separated by 219 nucleotides
SMa0232 and SMa0233 are separated by 21 nucleotides
SMa0233 and SMa0235 are separated by 414 nucleotides
SMa0228: SMa0228 - glutamate dehydrogenase, at 126,420 to 127,766
SMa0228
SMa0229: SMa0229 - hypothetical protein, at 128,085 to 128,507
SMa0229
SMa0232: SMa0232 - hypothetical protein, at 128,727 to 129,278
SMa0232
SMa0233: SMa0233 - OtsA trehalose-6-phosphate synthase, at 129,300 to 130,691
SMa0233
SMa0235: SMa0235 - dihydroxy-acid dehydratase, at 131,106 to 132,884
SMa0235
Group
Condition
SMa0228
SMa0229
SMa0232
SMa0233
SMa0235
stress
Nickel (II) chloride 1 mM
-0.1
+0.0
-1.2
-0.0
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.0
-0.3
-0.9
-0.1
-0.3
stress
Paraquat dichloride 0.3 mg/ml
-0.0
-0.4
-0.8
-0.2
-0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
-0.3
-1.4
+0.0
+0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.0
-0.0
-0.7
-0.1
-0.3
stress
Cisplatin 0.0005 mg/ml
-0.1
+0.1
-1.1
-0.1
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.0
-0.1
-0.7
+0.1
-0.4
nitrogen source
L-Histidine (N)
-0.1
+0.0
-0.6
+0.1
-0.4
nutrient
L-Lysine
-0.2
-0.2
-0.4
+0.1
-0.3
carbon source
m-Inositol (C)
+0.0
-0.3
-0.7
+0.1
-0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
-0.1
-0.4
-0.1
-0.4
carbon source
D-Glucose (C)
-0.2
+0.0
-0.5
+0.1
-0.3
carbon source
Fumarate (C)
+0.1
-0.2
-0.4
-0.1
-0.3
carbon source
succinate (C)
-0.0
-0.2
-0.6
-0.1
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.0
+0.1
-0.2
-0.3
-0.4
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.2
-0.2
-0.4
-0.4
+0.2
carbon source
D-Mannitol (C)
+0.0
-0.1
-0.8
+0.1
+0.1
lb
LB
+0.2
-0.2
-0.4
+0.1
-0.1
carbon source
acetate (C)
+0.0
-0.3
-0.4
-0.0
+0.2
nitrogen source
L-Leucine (N)
+0.0
-0.3
+0.3
+0.0
-0.5
carbon source
Protocatechuic Acid (C)
+0.1
-0.2
+0.3
-0.1
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
+0.2
-0.6
+0.1
+0.2
nitrogen source
L-Arginine (N)
-0.2
-0.4
+0.2
+0.1
+0.3
stress
Chlorite 0.1 mM
+0.2
+0.4
-0.0
-0.2
-0.3
pH
LB, pH6
-0.0
+0.0
-0.4
-0.1
+0.8
carbon source
Sucrose (C)
+0.1
+0.0
-0.4
+0.1
+0.3
stress
1-octen-3-ol 0.5427293333 mM
+0.0
-0.2
+0.4
+0.0
+0.2
stress
copper (II) chloride 1 mM
+0.1
-0.8
+0.6
-0.1
+0.7
stress
Aluminum chloride
+0.2
+0.4
+0.1
-0.0
+0.4
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.1
+0.2
+0.6
+0.1
+0.3
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