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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa0144 and SMa0146 are separated by 5 nucleotides
SMa0146 and SMa0148 are separated by 140 nucleotides
SMa0148 and SMa0149 are separated by 184 nucleotides
SMa0149 and SMa0150 are separated by 33 nucleotides
SMa0144: SMa0144 - hypothetical protein, at 79,504 to 80,289
SMa0144
SMa0146: SMa0146 - hypothetical protein, at 80,295 to 80,819
SMa0146
SMa0148: SMa0148 - hypothetical protein, at 80,960 to 81,673
SMa0148
SMa0149: SMa0149 - transcription elongation factor regulatory protein, at 81,858 to 82,340
SMa0149
SMa0150: SMa0150 - malonyl-CoA synthase, at 82,374 to 83,900
SMa0150
Group
Condition
SMa0144
SMa0146
SMa0148
SMa0149
SMa0150
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-3.8
-0.0
-0.3
-0.6
-0.1
carbon source
acetate (C)
-3.8
-0.0
+0.0
-0.0
-0.1
stress
Polymyxin B sulfate 0.00005 mg/ml
-2.3
+0.2
+0.2
-2.2
+0.0
r2a control
R2A control for volatile experiments
-3.5
+0.1
+0.0
-0.2
+0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-2.0
-0.3
-0.2
-0.5
-0.2
nitrogen source
L-Leucine (N)
-1.4
-0.7
-0.2
-0.7
+0.1
stress
Aluminum chloride
-2.1
-0.0
+0.0
-0.0
-0.3
carbon source
m-Inositol (C)
-1.3
-0.2
-0.1
-0.4
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.6
-0.5
-0.2
-0.9
+0.2
stress
Chloride 200 mM
-0.9
+0.0
-0.2
-0.8
+0.1
carbon source
Sucrose (C)
-1.7
+0.3
+0.0
-0.1
-0.1
carbon source
D,L-Lactate (C)
-1.3
-0.3
-0.2
+0.3
-0.1
nitrogen source
Gly-DL-Asp (N)
-1.0
-0.5
+0.1
+0.4
-0.3
lb
LB
-1.7
-0.1
+0.2
+0.6
-0.3
stress
Paraquat dichloride 0.05 mg/ml
-1.8
+0.2
-0.1
+0.4
+0.0
stress
3-octanone 2.655166667 mM
-1.9
+0.1
+0.2
+0.1
+0.2
carbon source
L-Malic (C)
-1.6
-0.2
-0.1
+0.7
+0.1
carbon source
palatinose (C)
-1.2
+0.4
-0.2
-0.2
+0.1
nitrogen source
nitrate (N)
-1.3
-0.3
+0.0
+0.8
-0.1
nitrogen source
Gelatin (N)
-1.0
-0.4
+0.2
+0.5
-0.2
carbon source
Lactitol (C)
+1.2
-0.3
-0.3
+0.1
-0.1
nitrogen source
L-Arginine (N)
+1.3
-0.4
+0.2
-0.1
-0.4
stress
copper (II) chloride 1 mM
-1.0
+0.6
+0.5
+0.7
+0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.0
+0.8
-0.6
+0.5
-0.1
stress
Chlorite 0.1 mM
+1.3
-0.5
+0.1
+0.1
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.8
-0.2
-0.4
+1.1
+0.1
carbon source
Myristic (C)
+1.3
+0.3
-0.1
+0.3
-0.5
nutrient
Min media with glucose
+1.4
+0.2
+0.0
+0.3
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+1.3
-0.2
+0.1
+0.3
+0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+1.1
+0.1
+0.2
+0.8
+0.1
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