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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa0089 and SMa0091 are separated by 124 nucleotides
SMa0091 and SMa0093 are separated by 261 nucleotides
SMa0093 and SMa0095 are separated by 50 nucleotides
SMa0095 and SMa0097 are separated by 16 nucleotides
SMa0089: SMa0089 - hypothetical protein, at 46,684 to 47,100
SMa0089
SMa0091: SMa0091 - hypothetical protein, at 47,225 to 47,920
SMa0091
SMa0093: SMa0093 - Branched-chain amino acid aminotransferase, at 48,182 to 49,033
SMa0093
SMa0095: SMa0095 - D-aminopeptidase, at 49,084 to 50,121
SMa0095
SMa0097: SMa0097 - LysR family transcriptional regulator, at 50,138 to 51,079
SMa0097
Group
Condition
SMa0089
SMa0091
SMa0093
SMa0095
SMa0097
nitrogen source
L-Arginine (N)
-1.5
-0.8
-0.2
-1.4
-0.1
nitrogen source
Gly-DL-Asp (N)
-0.4
-0.1
-1.8
-0.8
-0.7
stress
nitrate 40 mM
-0.6
-0.2
-0.2
-2.5
+0.1
nitrogen source
D-Glucosamine Hydrochloride (N)
-1.1
-0.1
-1.3
+0.0
+0.0
nitrogen source
Gelatin (N)
+0.1
-0.4
-0.8
-1.2
-0.1
stress
Paraquat dichloride 0.2 mg/ml
-0.3
-0.2
-0.6
-0.9
+0.0
stress
Nickel (II) chloride 1 mM
+0.1
-0.3
-0.6
-1.0
-0.1
nitrogen source
L-Serine (N)
+0.1
-0.4
-0.8
-0.7
+0.0
nitrogen source
Cytosine (N)
-0.1
-0.2
-0.8
-0.6
+0.1
nitrogen source
L-Asparagine (N)
-1.6
-0.1
-0.4
+0.7
-0.1
stress
copper (II) chloride 1 mM
-0.1
+0.5
-0.9
-0.5
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
-0.9
+0.1
-0.3
-0.3
carbon source
Methyl beta-D-glucopyranoside (C)
+0.4
-0.2
-0.9
-0.2
-0.2
nitrogen source
L-Leucine (N)
-0.2
+0.5
-1.0
-0.4
+0.0
lb
LB
-0.2
+0.1
-0.6
-0.6
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
+0.7
-0.6
-0.6
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
+0.7
-0.5
-0.7
-0.4
lb
LB
+0.2
-0.4
-0.7
+0.3
-0.2
stress
Aluminum chloride
+0.4
-0.6
+0.2
-0.3
-0.3
stress
Chlorite 0.1 mM
-0.3
-0.6
-0.2
+0.9
-0.3
r2a control
R2A control
-0.0
-0.2
+0.8
-0.6
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.6
-0.3
+1.0
+0.1
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.5
+0.7
+0.6
-0.8
-0.1
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
-0.1
+0.2
+0.9
-0.3
-0.5
stress
perchlorate 10 mM
-0.5
+0.2
+0.9
-0.2
-0.2
r2a control
R2A control for volatile experiments
-0.3
-0.3
+1.0
-0.2
-0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
+0.9
+0.6
-0.1
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.0
-0.5
+0.6
+1.2
-0.1
r2a control
R2A control for volatile experiments
-0.1
+0.7
+0.5
+0.6
+0.2
r2a control
R2A control for volatile experiments
+0.2
+0.4
+0.9
+0.8
+0.2
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