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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa0087 and SMa0089 are separated by 282 nucleotides
SMa0089 and SMa0091 are separated by 124 nucleotides
SMa0091 and SMa0093 are separated by 261 nucleotides
SMa0093 and SMa0095 are separated by 50 nucleotides
SMa0087: SMa0087 - hypothetical protein, at 46,069 to 46,401
SMa0087
SMa0089: SMa0089 - hypothetical protein, at 46,684 to 47,100
SMa0089
SMa0091: SMa0091 - hypothetical protein, at 47,225 to 47,920
SMa0091
SMa0093: SMa0093 - Branched-chain amino acid aminotransferase, at 48,182 to 49,033
SMa0093
SMa0095: SMa0095 - D-aminopeptidase, at 49,084 to 50,121
SMa0095
Group
Condition
SMa0087
SMa0089
SMa0091
SMa0093
SMa0095
nitrogen source
L-Arginine (N)
-1.7
-1.5
-0.8
-0.2
-1.4
stress
nitrate 40 mM
-0.4
-0.6
-0.2
-0.2
-2.5
nitrogen source
Gly-DL-Asp (N)
-0.2
-0.4
-0.1
-1.8
-0.8
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.3
-1.1
-0.1
-1.3
+0.0
stress
Paraquat dichloride 0.2 mg/ml
-0.7
-0.3
-0.2
-0.6
-0.9
nitrogen source
L-Leucine (N)
-1.4
-0.2
+0.5
-1.0
-0.4
nitrogen source
L-Serine (N)
-0.6
+0.1
-0.4
-0.8
-0.7
nitrogen source
Gelatin (N)
+0.1
+0.1
-0.4
-0.8
-1.2
nitrogen source
Cytosine (N)
-0.5
-0.1
-0.2
-0.8
-0.6
stress
Cisplatin 0.001 mg/ml
-1.5
-0.7
-0.4
+0.0
+0.3
nitrogen source
NAG (N)
-0.9
-0.1
-0.5
-0.5
-0.1
stress
Nickel (II) chloride 1 mM
-0.2
+0.1
-0.3
-0.6
-1.0
lb
LB
-0.7
-0.2
+0.1
-0.6
-0.6
stress
Paraquat dichloride 0.3 mg/ml
-0.4
-0.6
-0.1
-0.6
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.9
+0.1
+0.7
-0.5
-0.7
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
-2.0
-0.1
+0.2
+0.9
-0.3
stress
copper (II) chloride 1 mM
-0.2
-0.1
+0.5
-0.9
-0.5
stress
Thallium(I) acetate 0.0025 mg/ml
-0.8
+0.3
+0.1
-0.5
-0.4
stress
Aluminum chloride
-0.6
+0.4
-0.6
+0.2
-0.3
stress
Chlorite 0.1 mM
-0.6
-0.3
-0.6
-0.2
+0.9
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.8
-0.5
+0.7
+0.6
-0.8
nitrogen source
L-Asparagine (N)
+0.6
-1.6
-0.1
-0.4
+0.7
r2a control
R2A control for volatile experiments
-0.9
-0.3
-0.3
+1.0
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.6
-0.6
-0.3
+1.0
+0.1
stress
perchlorate 10 mM
-0.8
-0.5
+0.2
+0.9
-0.2
stress
Polymyxin B sulfate 0.00005 mg/ml
-1.0
+0.2
-0.1
+0.8
-0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.8
+0.3
-0.9
+0.1
-0.3
carbon source
Xylobiose (C)
-0.6
+0.1
+0.6
+0.9
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.7
-0.0
-0.5
+0.6
+1.2
r2a control
R2A control for volatile experiments
+0.2
+0.2
+0.4
+0.9
+0.8
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