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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa0083 and SMa0085 are separated by 17 nucleotides
SMa0085 and SMa0087 are separated by 16 nucleotides
SMa0087 and SMa0089 are separated by 282 nucleotides
SMa0089 and SMa0091 are separated by 124 nucleotides
SMa0083: SMa0083 - ABC transporter ATP-binding protein, at 44,302 to 45,081
SMa0083
SMa0085: SMa0085 - dehydrogenase, at 45,099 to 46,052
SMa0085
SMa0087: SMa0087 - hypothetical protein, at 46,069 to 46,401
SMa0087
SMa0089: SMa0089 - hypothetical protein, at 46,684 to 47,100
SMa0089
SMa0091: SMa0091 - hypothetical protein, at 47,225 to 47,920
SMa0091
Group
Condition
SMa0083
SMa0085
SMa0087
SMa0089
SMa0091
nitrogen source
L-Arginine (N)
+0.1
-0.8
-1.7
-1.5
-0.8
stress
Cisplatin 0.001 mg/ml
-0.2
-1.1
-1.5
-0.7
-0.4
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
-0.7
-0.2
-2.0
-0.1
+0.2
nitrogen source
NAG (N)
+0.6
-1.4
-0.9
-0.1
-0.5
stress
Chlorite 0.1 mM
-0.5
-0.1
-0.6
-0.3
-0.6
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.5
-0.9
-0.3
-1.1
-0.1
nitrogen source
Cytosine (N)
-0.0
-0.9
-0.5
-0.1
-0.2
carbon source
L-Fucose (C)
-0.2
-0.9
-0.2
+0.0
-0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.6
-1.6
-0.5
-0.2
+0.0
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.7
-0.7
-0.3
-0.1
+0.1
nitrogen source
L-Serine (N)
+0.2
-0.8
-0.6
+0.1
-0.4
nitrogen source
L-Asparagine (N)
+0.1
-0.5
+0.6
-1.6
-0.1
r2a control
R2A control for volatile experiments
-0.6
-0.7
-0.4
+0.0
+0.4
nitrogen source
L-Leucine (N)
-0.3
+0.0
-1.4
-0.2
+0.5
nutrient
L-Histidine
-0.3
-0.5
-0.8
+0.1
+0.2
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.3
-0.3
+0.3
-0.4
-0.5
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.4
-0.5
-0.4
-0.3
+0.4
stress
perchlorate 10 mM
-0.2
+0.3
-0.8
-0.5
+0.2
stress
Paraquat dichloride 0.2 mg/ml
+0.4
-0.1
-0.7
-0.3
-0.2
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.4
-0.3
-1.0
+0.2
-0.1
stress
Aluminum chloride
-0.0
+0.1
-0.6
+0.4
-0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.2
+1.0
-0.6
-0.6
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
-0.1
-0.8
-0.5
+0.7
stress
Sisomicin 0.004 mg/ml
-0.3
+0.4
-0.1
+0.3
-0.7
nitrogen source
nitrate (N)
+0.5
-0.3
+0.3
-0.1
-0.7
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
-0.3
-0.9
+0.1
+0.7
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
-0.4
+0.0
-0.2
+0.9
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.7
-0.6
-0.2
-0.0
+0.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.8
+0.2
+0.8
+0.3
-0.9
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
+0.8
+0.8
+0.1
+0.0
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