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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa0082 and SMa0083 are separated by 15 nucleotides
SMa0083 and SMa0085 are separated by 17 nucleotides
SMa0085 and SMa0087 are separated by 16 nucleotides
SMa0087 and SMa0089 are separated by 282 nucleotides
SMa0082: SMa0082 - ABC transporter substrate-binding protein, at 43,471 to 44,286
SMa0082
SMa0083: SMa0083 - ABC transporter ATP-binding protein, at 44,302 to 45,081
SMa0083
SMa0085: SMa0085 - dehydrogenase, at 45,099 to 46,052
SMa0085
SMa0087: SMa0087 - hypothetical protein, at 46,069 to 46,401
SMa0087
SMa0089: SMa0089 - hypothetical protein, at 46,684 to 47,100
SMa0089
Group
Condition
SMa0082
SMa0083
SMa0085
SMa0087
SMa0089
stress
Cisplatin 0.001 mg/ml
-0.7
-0.2
-1.1
-1.5
-0.7
nitrogen source
L-Arginine (N)
+0.1
+0.1
-0.8
-1.7
-1.5
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
-0.3
-0.7
-0.2
-2.0
-0.1
nitrogen source
L-Leucine (N)
-0.6
-0.3
+0.0
-1.4
-0.2
nitrogen source
Cytosine (N)
-0.5
-0.0
-0.9
-0.5
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-1.1
+0.3
-0.3
-0.9
+0.1
nutrient
Min media with glucose
-0.5
-0.5
-0.4
-0.4
-0.1
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.0
+0.5
-0.9
-0.3
-1.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.0
+0.6
-1.6
-0.5
-0.2
stress
Chlorite 0.1 mM
-0.2
-0.5
-0.1
-0.6
-0.3
nitrogen source
L-Asparagine (N)
-0.3
+0.1
-0.5
+0.6
-1.6
nutrient
L-Histidine
-0.2
-0.3
-0.5
-0.8
+0.1
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
+0.1
-0.7
-0.7
-0.3
-0.1
nitrogen source
L-Glutamine (N)
-0.5
-0.0
+0.2
-0.6
-0.5
stress
3-octanone 0.456 mM
+0.1
-0.2
-1.0
-0.4
-0.0
r2a control
R2A control for volatile experiments
+0.3
-0.6
-0.7
-0.4
+0.0
nitrogen source
L-Serine (N)
-0.2
+0.2
-0.8
-0.6
+0.1
stress
perchlorate 10 mM
-0.1
-0.2
+0.3
-0.8
-0.5
nitrogen source
NAG (N)
+0.6
+0.6
-1.4
-0.9
-0.1
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.1
+0.4
-0.3
-1.0
+0.2
stress
Paraquat dichloride 0.2 mg/ml
-0.9
-0.3
+0.4
+0.2
-0.3
stress
copper (II) chloride 1 mM
-0.8
+0.1
+0.5
-0.2
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.4
+0.7
-0.6
-0.2
-0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.0
-0.2
+1.0
-0.6
-0.6
stress
Paraquat dichloride 0.2 mg/ml
+0.3
+0.4
-0.1
-0.7
-0.3
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.5
-0.4
-0.2
+0.8
+0.1
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.6
-0.2
+0.5
+0.5
-0.2
stress
Nickel (II) chloride 1 mM
-0.5
+0.8
+0.2
-0.2
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
+0.3
+0.8
+0.8
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
+0.8
+0.2
+0.8
+0.3
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