Fitness for 5 genes in Sinorhizobium meliloti 1021

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500 ntSMa0005 and SMa0007 overlap by 23 nucleotidesSMa0007 and SMa0009 are separated by 38 nucleotidesSMa0009 and SMa0011 are separated by 4 nucleotidesSMa0011 and SMa0013 overlap by 92 nucleotides SMa0005: SMa0005 - formate dehydrogenase susbunit beta, at 4,454 to 5,446 SMa0005 SMa0007: SMa0007 - formate dehydrogenase subunit gamma, at 5,424 to 6,110 SMa0007 SMa0009: SMa0009 - formate dehydrogenase subunit epsilon, at 6,149 to 7,069 SMa0009 SMa0011: SMa0011 - selenocysteine synthase, at 7,074 to 8,474 SMa0011 SMa0013: SMa0013 - hypothetical protein, at 8,383 to 9,255 SMa0013
Group Condition SMa0005 SMa0007 SMa0009 SMa0011 SMa0013
stress Nickel (II) chloride 1 mM -0.2 -0.5 -0.5 -0.2 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 -0.3 -0.0 -0.1 -0.7
carbon source Lactitol (C) -0.3 -0.2 -0.4 -0.2 -0.4
stress Chlorite 0.1 mM -0.4 -0.2 -0.4 +0.0 -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.0 -0.1 -1.2 -0.2 +0.2
carbon source Lactitol (C) -0.2 -0.2 -0.2 -0.3 -0.2
carbon source Mannobiose (C) -0.1 -0.1 -0.4 +0.0 -0.5
stress Paraquat dichloride 0.2 mg/ml +0.0 -0.2 -0.3 -0.0 -0.4
stress Nickel (II) chloride 0.5 mM -0.1 +0.0 -0.5 -0.2 -0.1
carbon source L-Rhamnose (C) -0.1 -0.3 -0.0 -0.3 -0.3
carbon source D-Raffinose (C) -0.0 -0.1 -0.4 +0.0 -0.3
nutrient L-Histidine +0.0 -0.1 -0.3 +0.0 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 -0.2 -0.3 -0.4 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.0 +0.3 -0.0 -0.5 -0.6
temperature LB, 30C -0.1 +0.1 -0.3 -0.3 -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.0 -0.6 +0.2 -0.0 -0.3
stress perchlorate 10 mM -0.1 -0.1 -0.8 +0.3 +0.2
carbon source D-Glucose (C) -0.2 -0.0 -0.0 +0.3 -0.5
nitrogen source Uridine (N) +0.1 +0.3 -0.1 -0.2 -0.6
stress Polymyxin B sulfate 0.00005 mg/ml -0.4 -0.1 -0.4 +0.3 +0.2
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) +0.0 +0.3 -0.0 -0.4 -0.3
nitrogen source L-Leucine (N) +0.1 +0.1 +0.3 -0.3 -0.4
nitrogen source L-Serine (N) -0.1 +0.2 -0.2 +0.2 -0.4
stress nitrate 40 mM +0.1 -0.2 +0.2 -0.5 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 -0.2 +0.3 -0.4 +0.1
nitrogen source Cytosine (N) +0.3 +0.3 -0.3 -0.1 -0.4
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) +0.1 +0.2 +0.1 -0.6 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 +0.2 +0.3 -0.3 +0.0
nitrogen source L-Asparagine (N) +0.1 -0.1 +0.7 -0.2 -0.3
nitrogen source L-Arginine (N) -0.2 +0.0 +0.6 +0.2 -0.3
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