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Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa0002 and SMa0005 overlap by 4 nucleotides
SMa0005 and SMa0007 overlap by 23 nucleotides
SMa0007 and SMa0009 are separated by 38 nucleotides
SMa0009 and SMa0011 are separated by 4 nucleotides
SMa0002: SMa0002 - formate dehydrogenase subunit alpha, at 1,353 to 4,457
SMa0002
SMa0005: SMa0005 - formate dehydrogenase susbunit beta, at 4,454 to 5,446
SMa0005
SMa0007: SMa0007 - formate dehydrogenase subunit gamma, at 5,424 to 6,110
SMa0007
SMa0009: SMa0009 - formate dehydrogenase subunit epsilon, at 6,149 to 7,069
SMa0009
SMa0011: SMa0011 - selenocysteine synthase, at 7,074 to 8,474
SMa0011
Group
Condition
SMa0002
SMa0005
SMa0007
SMa0009
SMa0011
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
+0.0
-0.1
-1.2
-0.2
stress
Nickel (II) chloride 1 mM
-0.0
-0.2
-0.5
-0.5
-0.2
carbon source
Lactitol (C)
-0.2
-0.3
-0.2
-0.4
-0.2
carbon source
Lactitol (C)
-0.0
-0.2
-0.2
-0.2
-0.3
pH
LB, pH7
-0.2
-0.1
-0.0
-0.4
-0.1
stress
Nickel (II) chloride 0.5 mM
-0.1
-0.1
+0.0
-0.5
-0.2
stress
Chlorite 0.1 mM
-0.0
-0.4
-0.2
-0.4
+0.0
stress
perchlorate 10 mM
-0.1
-0.1
-0.1
-0.8
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.0
-0.1
-0.2
-0.3
-0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
-0.3
-0.3
-0.0
-0.1
carbon source
L-Rhamnose (C)
-0.2
-0.1
-0.3
-0.0
-0.3
stress
Thallium(I) acetate 0.001 mg/ml
-0.2
+0.0
-0.1
+0.0
-0.5
temperature
LB, 30C
-0.1
-0.1
+0.1
-0.3
-0.3
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.1
-0.4
-0.1
-0.4
+0.3
stress
nitrate 40 mM
-0.3
+0.1
-0.2
+0.2
-0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.0
-0.2
-0.5
-0.1
+0.1
stress
Cisplatin 0.001 mg/ml
-0.1
+0.0
-0.1
+0.1
-0.6
nutrient
Min media with glucose
-0.1
+0.1
-0.1
-0.2
-0.3
stress
D-Cycloserine 0.05 mg/ml
-0.2
+0.1
+0.1
-0.3
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
-0.1
-0.2
+0.3
-0.4
nitrogen source
L-Leucine (N)
-0.2
+0.1
+0.1
+0.3
-0.3
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.0
+0.1
+0.2
+0.1
-0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.1
+0.0
+0.3
-0.0
-0.5
stress
Aluminum chloride
+0.2
-0.2
+0.2
+0.0
-0.3
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.0
+0.0
+0.3
-0.0
-0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.0
-0.2
+0.2
+0.3
-0.3
nitrogen source
L-Serine (N)
-0.1
-0.1
+0.2
-0.2
+0.2
nitrogen source
Cytosine (N)
+0.1
+0.3
+0.3
-0.3
-0.1
nitrogen source
L-Asparagine (N)
+0.0
+0.1
-0.1
+0.7
-0.2
nitrogen source
L-Arginine (N)
+0.1
-0.2
+0.0
+0.6
+0.2
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