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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20158 and SM_b20159 are separated by 53 nucleotides
SM_b20159 and SM_b22005 are separated by 678 nucleotides
SM_b22005 and SM_b20161 overlap by 4 nucleotides
SM_b20161 and SM_b20162 are separated by 193 nucleotides
SM_b20158: SM_b20158 - ABC transporter substrate-binding protein, at 176,427 to 177,551
_b20158
SM_b20159: SM_b20159 - inositol monophosphatase, at 177,605 to 178,489
_b20159
SM_b22005: SM_b22005 - hypothetical protein, at 179,168 to 179,536
_b22005
SM_b20161: SM_b20161 - hypothetical protein, at 179,533 to 179,883
_b20161
SM_b20162: SM_b20162 - transcriptional regulator, at 180,077 to 180,766
_b20162
Group
Condition
SM
_b20158
SM
_b20159
SM
_b22005
SM
_b20161
SM
_b20162
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
+0.3
-2.9
-0.4
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.3
-0.2
-1.2
-0.4
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.0
-0.8
-1.1
+0.2
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
-0.3
-1.0
-0.2
-0.3
stress
3-octanone 5.310333333 mM
-0.0
-0.1
-1.0
+0.0
-0.3
lb
LB
-0.0
-0.2
-1.0
+0.0
-0.1
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.0
+0.1
-1.2
-0.2
+0.0
lb
LB
-0.1
-0.0
-1.4
+0.2
+0.3
carbon source
Uridine (C)
+0.1
-0.2
-0.6
-0.4
+0.2
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.1
+0.2
-0.7
-0.1
-0.2
carbon source
Protocatechuic Acid (C)
+0.1
+0.4
-0.9
-0.1
+0.1
r2a control
R2A control for volatile experiments
+0.1
+0.3
-0.6
+0.4
-0.5
stress
Cisplatin 0.001 mg/ml
-0.2
-0.2
-0.5
+0.4
+0.2
stress
Paraquat dichloride 0.2 mg/ml
-0.0
-0.1
-0.7
-0.1
+0.6
nitrogen source
nitrate (N)
-0.2
-0.3
+0.5
-0.3
+0.1
carbon source
Beta-Lactose (C)
+0.2
+0.1
-0.8
+0.3
+0.1
stress
1-octen-3-ol 0.5427293333 mM
-0.1
+0.0
+0.8
-0.3
-0.3
stress
3-octanone 0.456 mM
+0.2
-0.3
+0.4
+0.5
-0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
-0.4
+0.7
+0.2
-0.4
nitrogen source
L-Serine (N)
+0.1
-0.5
+0.2
+0.4
+0.3
carbon source
D-Glucose (C)
+0.1
-0.0
+0.9
-0.4
-0.1
nitrogen source
L-Asparagine (N)
+0.0
-0.6
+0.9
+0.5
-0.1
stress
Chlorite 0.1 mM
-0.4
-0.1
+0.9
+0.2
+0.1
stress
Paraquat dichloride 0.3 mg/ml
+0.2
+0.2
+0.5
-0.2
+0.4
nitrogen source
Gelatin (N)
+0.0
-0.2
+0.8
+0.3
+0.1
stress
Sisomicin 0.004 mg/ml
-0.2
-0.0
+0.6
+0.2
+0.6
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.2
-0.1
+0.9
+0.6
+0.2
nitrogen source
L-Arginine (N)
-0.1
+0.3
+1.0
+0.9
-0.3
nitrogen source
Gly-DL-Asp (N)
-0.0
+0.2
+1.0
+0.4
+0.2
nitrogen source
NAG (N)
+0.1
+0.1
+1.2
+0.3
+0.2
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