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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b21578 and SM_b21579 are separated by 59 nucleotides
SM_b21579 and SM_b21580 are separated by 46 nucleotides
SM_b21580 and SM_b21581 are separated by 264 nucleotides
SM_b21581 and SM_b21582 are separated by 95 nucleotides
SM_b21578: SM_b21578 - copper-transporting P-type ATPase, at 1,116,959 to 1,119,442
_b21578
SM_b21579: SM_b21579 - MerR family transcriptional regulator, at 1,119,502 to 1,119,945
_b21579
SM_b21580: SM_b21580 - hypothetical protein, at 1,119,992 to 1,120,438
_b21580
SM_b21581: SM_b21581 - glycosyltransferase, at 1,120,703 to 1,121,794
_b21581
SM_b21582: SM_b21582 - exoD-like membrane protein, at 1,121,890 to 1,122,522
_b21582
Group
Condition
SM
_b21578
SM
_b21579
SM
_b21580
SM
_b21581
SM
_b21582
stress
Aluminum chloride
-0.2
-0.0
-4.0
-0.2
-0.5
pH
LB, pH8
+0.0
-0.1
-2.8
-0.1
+0.0
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.0
-0.0
-2.9
-0.0
+0.2
carbon source
D-Xylose (C)
+0.1
-0.2
-2.0
+0.2
-0.1
temperature
LB, 23C
+0.0
-0.4
-1.2
-0.1
-0.2
r2a control
R2A control for volatile experiments
+0.1
-0.0
-1.5
-0.2
+0.0
carbon source
D-Glucose (C)
+0.0
+0.2
-1.5
-0.2
+0.0
stress
D-Cycloserine 0.05 mg/ml
+0.2
+0.0
-1.0
+0.0
-0.7
nutrient
L-Histidine
-0.2
+0.2
-0.5
-0.1
-0.7
carbon source
Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
-0.2
-0.0
-1.3
-0.0
+0.4
carbon source
acetate (C)
-0.3
-0.3
-1.1
+0.4
+0.3
lb
LB
+0.5
-0.1
-1.0
+0.0
-0.4
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
+0.2
-0.3
-1.0
-0.0
+0.2
stress
Cisplatin 0.0005 mg/ml
+0.2
-0.0
-0.8
+0.2
-0.5
carbon source
D-Glucose (C)
-0.1
+0.1
-1.2
-0.1
+0.6
pH
LB, pH6
+0.5
+0.1
-1.1
-0.1
+0.2
nitrogen source
Cytosine (N)
-0.1
-0.5
+0.7
-0.2
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
-0.3
+0.7
-0.0
-0.5
nitrogen source
Uridine (N)
+0.2
-0.6
+0.7
+0.1
-0.3
nitrogen source
NAG (N)
-0.1
-0.5
+1.7
-0.0
-0.6
stress
Cisplatin 0.001 mg/ml
+0.2
-0.3
+0.8
-0.4
+0.2
stress
Thallium(I) acetate 0.0025 mg/ml
+0.5
-0.4
+1.4
-0.1
-0.7
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.6
+0.5
+0.2
-0.0
-0.6
pH
LB, pH6
+0.7
+0.5
-0.9
+0.0
+0.4
nitrogen source
L-Histidine (N)
+0.2
-0.0
+1.1
-0.1
-0.3
carbon source
Lactitol (C)
-0.0
-0.4
+1.0
+0.0
+0.5
stress
nitrate 40 mM
+0.1
-0.1
+1.6
+0.1
-0.4
stress
Paraquat dichloride 0.3 mg/ml
+0.6
-0.3
+1.1
+0.3
-0.1
stress
copper (II) chloride 1 mM
+0.6
+0.8
+0.5
+0.1
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
+0.1
+1.5
-0.0
+0.5
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