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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b21574 and SM_b21575 are separated by 373 nucleotides
SM_b21575 and SM_b21576 are separated by 1 nucleotides
SM_b21576 and SM_b21577 are separated by 415 nucleotides
SM_b21577 and SM_b21578 are separated by 283 nucleotides
SM_b21574: SM_b21574 - sensor histidine kinase domain-containing protein, at 1,113,430 to 1,113,813
_b21574
SM_b21575: SM_b21575 - transporter, at 1,114,187 to 1,115,392
_b21575
SM_b21576: SM_b21576 - ArsR family transcriptional regulator, at 1,115,394 to 1,115,759
_b21576
SM_b21577: SM_b21577 - hypothetical protein, at 1,116,175 to 1,116,675
_b21577
SM_b21578: SM_b21578 - copper-transporting P-type ATPase, at 1,116,959 to 1,119,442
_b21578
Group
Condition
SM
_b21574
SM
_b21575
SM
_b21576
SM
_b21577
SM
_b21578
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.8
+0.0
-0.0
-1.0
+0.2
stress
Aluminum chloride
-0.3
-0.4
-0.2
-0.3
-0.2
stress
3-octanone 0.456 mM
-0.2
+0.1
-1.1
-0.0
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.1
-0.5
-0.5
-0.0
+0.2
carbon source
5-Aminovaleric (C)
-0.4
+0.1
-0.3
-0.3
-0.0
stress
Cisplatin 0.0005 mg/ml
-0.2
-0.3
-0.4
-0.2
+0.2
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.4
-0.4
-0.3
-0.6
-0.0
lb no stress control
LB no stress control
-0.2
-0.1
-0.6
+0.1
+0.1
stress
D-Cycloserine 0.05 mg/ml
-0.3
+0.1
-0.3
-0.5
+0.2
carbon source
D-Fructose (C)
-0.2
+0.1
+0.2
-0.4
-0.2
lb
LB
-0.0
-0.0
+0.0
-0.8
+0.4
carbon source
L-Lactate (C)
-0.4
+0.1
+0.1
-0.3
+0.2
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.4
-0.2
-0.1
+0.4
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.5
-0.2
-0.0
-0.2
+0.6
r2a control
R2A control for volatile experiments
+0.1
-0.2
-0.6
+0.4
+0.0
nitrogen source
L-Leucine (N)
-0.3
-0.1
+0.6
+0.0
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
-0.5
+0.1
+0.4
-0.0
stress
Thallium(I) acetate 0.001 mg/ml
-0.1
+0.2
-0.4
-0.2
+0.4
nitrogen source
L-Histidine (N)
-0.2
+0.0
+0.4
-0.4
+0.2
pH
LB, pH6
-0.1
-0.1
-0.1
-0.4
+0.7
stress
copper (II) chloride 1 mM
-0.1
+0.1
+0.1
-0.5
+0.6
nitrogen source
Gelatin (N)
-0.1
-0.0
+0.4
+0.3
-0.3
stress
Cisplatin 0.001 mg/ml
+0.3
-0.1
+0.2
-0.3
+0.2
stress
Paraquat dichloride 0.2 mg/ml
-0.4
+0.4
+0.4
-0.0
+0.4
stress
Nickel (II) chloride 1 mM
-0.3
+0.0
+0.3
+0.6
+0.2
stress
Paraquat dichloride 0.05 mg/ml
-0.1
+0.1
+0.2
+0.2
+0.5
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.2
+0.3
-0.2
+0.6
+0.0
pH
LB, pH6
-0.1
+0.1
+0.4
+0.1
+0.5
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.1
+0.1
+0.6
+0.5
-0.0
stress
Paraquat dichloride 0.3 mg/ml
+0.1
+0.1
+0.0
+0.2
+0.6
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