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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b21531 and SM_b21532 overlap by 1 nucleotides
SM_b21532 and SM_b21533 are separated by 142 nucleotides
SM_b21533 and SM_b21534 are separated by 79 nucleotides
SM_b21534 and SM_b21535 are separated by 15 nucleotides
SM_b21531: SM_b21531 - hypothetical protein, at 1,057,500 to 1,058,537
_b21531
SM_b21532: SM_b21532 - phosphate acetyltransferase, at 1,058,537 to 1,059,529
_b21532
SM_b21533: SM_b21533 - GntR family transcriptional regulator, at 1,059,672 to 1,060,457
_b21533
SM_b21534: SM_b21534 - dehydrogenase, at 1,060,537 to 1,063,014
_b21534
SM_b21535: SM_b21535 - LysR family transcriptional regulator, at 1,063,030 to 1,063,899
_b21535
Group
Condition
SM
_b21531
SM
_b21532
SM
_b21533
SM
_b21534
SM
_b21535
carbon source
Myristic (C)
-0.5
-0.1
-0.4
-0.1
-0.2
carbon source
acetate (C)
-0.4
-0.2
-0.1
-0.2
-0.3
carbon source
pipercolic (C)
-0.5
-0.2
-0.1
-0.2
-0.2
carbon source
5-Aminovaleric (C)
-0.2
-0.4
+0.3
-0.2
-0.5
carbon source
Protocatechuic Acid (C)
-0.6
-0.3
+0.2
-0.1
-0.2
stress
Cisplatin 0.0005 mg/ml
-0.7
-0.5
+0.1
+0.1
+0.2
carbon source
L-Lysine (C)
-0.2
-0.3
+0.2
-0.2
-0.2
carbon source
Fumarate (C)
-0.4
-0.2
+0.2
-0.1
-0.2
carbon source
L-Alanine (C)
-0.6
-0.1
+0.2
-0.2
+0.0
stress
Aluminum chloride
-0.9
+0.5
+0.1
-0.1
-0.2
carbon source
D-Xylose (C)
-0.4
-0.4
+0.2
-0.1
+0.1
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.4
-0.4
+0.2
+0.0
+0.1
lb
LB
-0.6
+0.0
+0.3
-0.1
+0.0
stress
Paraquat dichloride 0.3 mg/ml
-0.2
-0.4
+0.5
-0.1
-0.2
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.4
+0.5
-0.4
-0.0
+0.0
r2a control
R2A control for volatile experiments
-0.5
-0.2
+0.3
-0.1
+0.2
nitrogen source
nitrate (N)
-0.8
+0.3
+0.1
-0.1
+0.2
temperature
LB, 23C
-0.6
+0.2
+0.2
+0.0
+0.1
stress
Thallium(I) acetate 0.0025 mg/ml
-0.5
+0.2
+0.3
+0.1
-0.1
stress
nitrate 40 mM
+0.0
-0.4
+0.4
-0.1
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.8
+0.1
+0.3
+0.2
+0.3
stress
Sisomicin 0.004 mg/ml
+0.1
-0.4
+0.6
+0.0
-0.0
nitrogen source
L-Arginine (N)
-0.4
+0.5
+0.1
+0.0
+0.0
stress
copper (II) chloride 1 mM
+0.0
-0.6
+0.6
+0.0
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.4
+0.6
+0.2
-0.0
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.2
-0.2
+0.6
+0.1
-0.2
stress
3-octanone 0.456 mM
+0.4
-0.4
+0.1
+0.0
+0.2
nitrogen source
L-Histidine (N)
-0.3
+0.6
+0.1
-0.1
+0.4
nitrogen source
L-Asparagine (N)
+0.0
+0.7
+0.3
-0.1
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.5
+0.1
+0.3
+0.1
+0.1
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