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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b21512 and SM_b21513 overlap by 4 nucleotides
SM_b21513 and SM_b21514 are separated by 123 nucleotides
SM_b21514 and SM_b21515 overlap by 4 nucleotides
SM_b21515 and SM_b21516 are separated by 253 nucleotides
SM_b21512: SM_b21512 - hypothetical protein, at 1,435,612 to 1,436,760
_b21512
SM_b21513: SM_b21513 - cell-surface polysaccharide exporter protein PST family, at 1,436,757 to 1,438,067
_b21513
SM_b21514: SM_b21514 - modification methylase, at 1,438,191 to 1,439,018
_b21514
SM_b21515: SM_b21515 - hypothetical protein, at 1,439,015 to 1,440,136
_b21515
SM_b21516: SM_b21516 - hypothetical protein, at 1,440,390 to 1,441,121
_b21516
Group
Condition
SM
_b21512
SM
_b21513
SM
_b21514
SM
_b21515
SM
_b21516
stress
Aluminum chloride
-0.3
+0.1
-0.1
-0.7
-0.4
carbon source
pyruvate (C)
+0.2
-0.1
-0.2
-0.2
-0.3
lb
LB
-0.2
-0.0
-0.1
-0.6
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.3
+0.2
+0.1
-0.7
-0.5
nitrogen source
Cytosine (N)
+0.6
-0.0
-0.3
-0.2
-0.4
stress
Cisplatin 0.001 mg/ml
+0.4
-0.1
-0.5
-0.4
+0.1
pH
LB, pH6
-0.2
-0.2
-0.2
-0.4
+0.6
stress
Thallium(I) acetate 0.0025 mg/ml
+0.2
-0.1
-0.4
+0.3
-0.3
nitrogen source
NAG (N)
+0.3
-0.1
+0.3
-0.3
-0.3
stress
Nickel (II) chloride 1 mM
+0.5
+0.1
-0.1
-0.5
-0.1
stress
Sisomicin 0.004 mg/ml
+0.3
+0.1
-0.3
+0.2
-0.3
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.4
+0.1
+0.0
-0.2
-0.3
carbon source
D-Salicin (C)
+0.2
-0.1
-0.1
+0.4
-0.4
stress
Fusidic 0.0001 mg/ml
+0.2
+0.2
-0.1
+0.3
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
+0.4
-0.3
+0.0
+0.2
pH
LB, pH6
-0.2
-0.0
-0.4
+0.1
+0.7
pH
LB, pH8
+0.1
+0.2
+0.5
+0.1
-0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.3
+0.2
-0.2
+0.3
+0.4
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
-0.4
+0.2
+0.2
+0.3
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
+0.2
-0.2
+0.4
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.4
+0.3
-0.2
+0.2
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.5
+0.3
+0.0
-0.3
+0.5
stress
copper (II) chloride 1 mM
-0.0
-0.2
+0.1
-0.0
+1.1
stress
Paraquat dichloride 0.3 mg/ml
+0.6
+0.1
+0.3
+0.0
-0.1
stress
Chlorite 0.1 mM
-0.5
+0.0
-0.0
+0.4
+1.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
+0.1
-0.2
+0.6
+0.3
stress
Paraquat dichloride 0.2 mg/ml
+0.8
+0.0
+0.2
+0.4
-0.1
nitrogen source
L-Arginine (N)
+0.8
+0.2
+0.3
+0.1
-0.1
stress
nitrate 40 mM
+0.4
+0.1
+0.3
+0.6
+0.2
stress
copper (II) chloride 1 mM
+0.6
-0.1
-0.4
+0.5
+2.0
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