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Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b21505 and SM_b21506 are separated by 12 nucleotides
SM_b21506 and SM_b21507 are separated by 202 nucleotides
SM_b21507 and SM_b21508 are separated by 40 nucleotides
SM_b21508 and SM_b21509 are separated by 173 nucleotides
SM_b21505: SM_b21505 - membrane protein, Wzy-like polysaccharide polymerase ExoQ, at 1,429,976 to 1,431,307
_b21505
SM_b21506: SM_b21506 - cell surface polysaccharides export protein, at 1,431,320 to 1,432,936
_b21506
SM_b21507: SM_b21507 - amino acid transporter, exporter protein, at 1,433,139 to 1,433,795
_b21507
SM_b21508: SM_b21508 - dihydrodipicolinate synthetase, at 1,433,836 to 1,434,750
_b21508
SM_b21509: SM_b21509 - plasmid stability protein, at 1,434,924 to 1,435,436
_b21509
Group
Condition
SM
_b21505
SM
_b21506
SM
_b21507
SM
_b21508
SM
_b21509
nitrogen source
L-Asparagine (N)
+0.2
+0.2
+0.5
+0.1
-3.8
nitrogen source
L-Glutamine (N)
-0.2
-0.2
-0.2
-0.2
-0.9
nitrogen source
L-Leucine (N)
-0.2
+0.2
-0.5
-0.7
-0.5
stress
Chlorite 0.1 mM
-0.2
-0.3
-0.2
-0.3
-0.5
stress
Thallium(I) acetate 0.0025 mg/ml
-0.2
-0.2
-0.3
-0.2
-0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.1
-0.2
-0.4
+0.6
-1.4
lb
LB
-0.1
-0.2
-0.4
+0.0
-0.5
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.1
-0.4
-0.1
-0.2
-0.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.5
+0.1
-0.2
-0.6
+0.1
nitrogen source
nitrate (N)
+0.1
-0.3
-0.2
+0.1
-0.7
nitrogen source
L-Histidine (N)
-0.0
+0.2
-0.5
+0.2
-0.8
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.1
+0.0
-0.0
-0.3
-0.8
lb
LB
-0.0
-0.2
-0.3
+0.2
-0.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
-0.3
+0.0
+0.4
-1.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
+0.0
+0.3
-0.3
-0.6
nitrogen source
Cytosine (N)
-0.0
+0.4
-0.6
-0.3
+0.2
nitrogen source
Gelatin (N)
+0.0
+0.0
+0.2
+0.4
-0.9
nitrogen source
L-Serine (N)
-0.1
+0.2
-0.3
+0.4
-0.4
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.1
-0.6
-0.1
+0.1
+0.4
stress
Cisplatin 0.001 mg/ml
-0.0
+0.0
-0.5
+0.0
+0.7
stress
Paraquat dichloride 0.05 mg/ml
-0.2
-0.0
-0.4
+0.4
+0.5
stress
Nickel (II) chloride 1 mM
-0.1
-0.4
+0.2
+0.4
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
+0.1
-0.3
+0.2
+0.6
stress
Aluminum chloride
+0.0
-0.1
-0.4
+0.2
+0.8
carbon source
D-Salicin (C)
+0.1
-0.2
-0.0
-0.3
+1.1
carbon source
Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
-0.1
-0.1
+0.2
+0.1
+0.7
stress
Paraquat dichloride 0.3 mg/ml
+0.2
-0.2
+0.1
+0.2
+0.6
carbon source
Protocatechuic Acid (C)
+0.1
+0.2
-0.1
+0.1
+0.8
carbon source
succinate (C)
-0.0
+0.1
+0.3
+0.1
+0.7
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
+0.1
+0.0
+0.2
+0.0
+1.0
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