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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b21500 and SM_b21501 are separated by 55 nucleotides
SM_b21501 and SM_b21502 overlap by 4 nucleotides
SM_b21502 and SM_b21503 are separated by 231 nucleotides
SM_b21503 and SM_b21504 are separated by 10 nucleotides
SM_b21500: SM_b21500 - glycosyltransferase, at 1,425,015 to 1,426,058
_b21500
SM_b21501: SM_b21501 - hypothetical protein, at 1,426,114 to 1,426,476
_b21501
SM_b21502: SM_b21502 - glycosyltransferase, at 1,426,473 to 1,427,642
_b21502
SM_b21503: SM_b21503 - glycosyltransferase, at 1,427,874 to 1,429,217
_b21503
SM_b21504: SM_b21504 - hypothetical protein, at 1,429,228 to 1,429,983
_b21504
Group
Condition
SM
_b21500
SM
_b21501
SM
_b21502
SM
_b21503
SM
_b21504
nitrogen source
L-Glutamine (N)
-0.1
-1.4
+0.2
+0.1
-0.4
stress
Fusidic 0.0001 mg/ml
-0.1
-1.2
+0.1
+0.0
-0.2
carbon source
5-Aminovaleric (C)
-0.1
-1.3
-0.0
+0.4
-0.2
carbon source
Maltitol (C)
-0.4
+0.2
-0.1
-0.3
-0.5
carbon source
Xylobiose (C)
-0.1
-1.1
-0.0
+0.2
+0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.0
-0.9
+0.3
+0.2
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
-0.6
+0.1
+0.3
-0.6
stress
Thallium(I) acetate 0.001 mg/ml
+0.1
-0.5
+0.0
+0.3
-0.5
stress
Cisplatin 0.0005 mg/ml
+0.4
-1.2
+0.2
+0.2
-0.2
nitrogen source
Gelatin (N)
+0.1
-0.2
+0.3
+0.1
-0.9
stress
Paraquat dichloride 0.2 mg/ml
+0.1
-0.4
+0.1
+0.2
-0.6
carbon source
succinate (C)
-0.1
-0.9
+0.3
+0.0
+0.3
lb
LB
+0.2
-0.8
+0.0
+0.4
-0.0
carbon source
acetate (C)
-0.1
-0.9
+0.2
+0.6
+0.1
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.6
-0.6
-0.1
-0.4
+0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.4
-0.5
+0.1
+0.6
-0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
+0.2
+0.1
+0.6
-0.7
carbon source
D-Mannitol (C)
+0.3
-0.8
+0.1
+0.4
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.3
-0.8
-0.0
+0.7
-0.1
lb
LB
+0.3
-0.5
+0.2
+0.7
-0.6
carbon source
Lactitol (C)
-0.1
+0.8
-0.0
-0.5
-0.1
nitrogen source
L-Arginine (N)
+0.0
+0.6
-0.1
+0.3
-0.5
stress
Thallium(I) acetate 0.0025 mg/ml
-0.0
+0.2
-0.2
+0.6
-0.4
lb
LB
+0.2
-0.3
+0.3
+0.4
-0.3
lb
LB
+0.4
-0.2
+0.3
+0.5
-0.3
stress
D-Cycloserine 0.05 mg/ml
+0.6
-0.4
+0.4
+0.8
-0.2
stress
Paraquat dichloride 0.3 mg/ml
+0.4
+0.6
+0.2
+0.5
-0.3
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.6
+0.2
+0.4
+0.7
-0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.6
+1.4
-0.2
+0.6
-0.6
stress
nitrate 40 mM
+0.4
+0.9
+0.4
+0.5
+0.2
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