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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b21485 and SM_b21486 overlap by 32 nucleotides
SM_b21486 and SM_b21487 are separated by 299 nucleotides
SM_b21487 and SM_b21488 are separated by 37 nucleotides
SM_b21488 and SM_b21489 overlap by 4 nucleotides
SM_b21485: SM_b21485 - hypothetical protein, at 1,406,242 to 1,406,682
_b21485
SM_b21486: SM_b21486 - metabolite transport protein, at 1,406,651 to 1,407,991
_b21486
SM_b21487: SM_b21487 - cytochrome o ubiquinol oxidase subunit II, at 1,408,291 to 1,409,451
_b21487
SM_b21488: SM_b21488 - cytochrome o ubiquinol oxidase subunit I, at 1,409,489 to 1,411,498
_b21488
SM_b21489: SM_b21489 - cytochrome O ubiquinol oxidase subunit III, at 1,411,495 to 1,412,127
_b21489
Group
Condition
SM
_b21485
SM
_b21486
SM
_b21487
SM
_b21488
SM
_b21489
stress
copper (II) chloride 1 mM
+0.3
+0.1
-1.3
-2.0
-2.1
stress
copper (II) chloride 1 mM
+0.3
-0.0
-0.7
-1.4
-3.1
carbon source
Protocatechuic Acid (C)
+0.1
+0.0
-1.1
-0.8
-0.8
stress
sodium fluoride 100 mM
+0.5
+0.2
-0.7
-0.9
-1.4
stress
Cisplatin 0.001 mg/ml
-0.8
-0.6
+0.3
-0.4
-0.8
carbon source
Protocatechuic Acid (C)
+0.5
+0.1
-0.8
-0.7
-0.7
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-2.0
-0.1
+0.2
-0.1
+0.4
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.1
+0.0
+0.7
-0.1
-1.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.5
-0.4
+0.4
+0.5
-0.5
carbon source
D-Glucosamine Hydrochloride (C)
-0.3
-0.4
+0.6
+0.4
+0.3
nitrogen source
Cytosine (N)
+0.3
+0.4
+0.5
+0.3
-0.6
stress
Cobalt chloride 0.16 mM
+0.7
-0.4
+0.7
+0.3
-0.2
stress
Paraquat dichloride 0.2 mg/ml
+0.4
-0.0
+1.1
+0.3
-0.3
nitrogen source
L-Histidine (N)
+0.5
-0.2
+0.5
+0.2
+0.6
carbon source
L-Histidine (C)
+0.2
-0.2
+0.8
+0.4
+0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.7
+0.3
+0.5
+0.4
-0.2
nutrient
Min media with glucose
-0.1
-0.2
+0.8
+0.8
+0.5
lb
LB
+0.2
-0.2
+0.8
+0.5
+0.5
stress
Thallium(I) acetate 0.0025 mg/ml
-0.3
-0.1
+0.8
+0.5
+0.9
stress
Nickel (II) chloride 0.5 mM
+0.4
-0.0
+0.8
+0.5
+0.2
stress
Chloride 200 mM
-0.3
+0.4
+0.7
+0.5
+0.7
carbon source
Lactitol (C)
+0.3
+0.1
+0.5
+0.4
+0.7
nutrient
Min media with glucose
-0.0
-0.5
+0.8
+0.7
+1.0
nutrient
L-Histidine
+0.6
+0.2
+0.5
+0.5
+0.4
lb
LB
+0.2
+0.4
+0.9
+0.6
+0.4
pH
LB, pH8
-0.4
+0.6
+1.8
+0.4
+0.2
pH
LB, pH8
+0.1
+0.4
+1.8
+0.7
-0.1
pH
LB, pH6
-0.5
-0.0
+1.5
+1.3
+1.2
pH
LB, pH6
+0.1
-0.1
+1.5
+1.3
+1.0
stress
Aluminum chloride
+0.2
+0.2
+1.6
+1.1
+0.7
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