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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b21479 and SM_b21480 are separated by 44 nucleotides
SM_b21480 and SM_b21481 overlap by 7 nucleotides
SM_b21481 and SM_b21482 are separated by 296 nucleotides
SM_b21482 and SM_b21483 are separated by 92 nucleotides
SM_b21479: SM_b21479 - hypothetical protein, at 1,403,027 to 1,403,329
_b21479
SM_b21480: SM_b21480 - hypothetical protein, at 1,403,374 to 1,403,634
_b21480
SM_b21481: SM_b21481 - hypothetical protein, at 1,403,628 to 1,404,104
_b21481
SM_b21482: SM_b21482 - hypothetical protein, at 1,404,401 to 1,404,703
_b21482
SM_b21483: SM_b21483 - hypothetical protein, at 1,404,796 to 1,405,077
_b21483
Group
Condition
SM
_b21479
SM
_b21480
SM
_b21481
SM
_b21482
SM
_b21483
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.5
-5.3
+0.1
+0.5
-0.1
nitrogen source
L-Histidine (N)
-0.0
-4.6
-0.0
-0.3
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.7
-2.5
+0.1
-0.8
-0.2
nitrogen source
L-Arginine (N)
-1.7
-1.3
-0.1
-1.2
-0.2
stress
Cisplatin 0.001 mg/ml
-0.5
-2.8
+0.1
-0.2
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.6
-3.8
+0.2
+0.5
+0.2
stress
Chlorite 0.1 mM
-0.6
-2.1
-0.2
+0.1
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.9
-1.4
-0.1
-0.3
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.4
-1.1
+0.3
-1.9
-0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.7
-0.3
-0.0
-0.7
-0.9
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.2
-1.3
+0.3
-0.0
+0.0
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.6
-1.7
+0.0
-0.2
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
-2.3
-0.0
+0.1
-0.1
stress
Thallium(I) acetate 0.0025 mg/ml
+0.2
-1.5
-0.4
-0.2
-0.2
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-1.0
-0.3
+0.1
-1.1
+0.5
stress
Polymyxin B sulfate 0.00005 mg/ml
-1.6
+0.4
-0.0
-0.3
-0.2
nitrogen source
Cytosine (N)
+0.4
-0.6
-0.1
-1.0
-0.2
r2a control
R2A control for volatile experiments
-1.2
+1.2
-0.3
-0.5
+0.1
nutrient
Min media with glucose
-0.3
-1.1
+0.3
+0.4
+0.1
r2a-hepes control
R2A-HEPES control for volatile experiments
-1.1
+0.8
-0.3
-0.0
+0.1
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
+0.7
-1.1
-0.1
-0.2
+0.2
stress
1-octen-3-ol 0.4933903333 mM
+0.7
-1.0
+0.2
-0.2
+0.3
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.7
+1.4
+0.0
-0.5
+0.2
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
+0.8
-0.9
+0.1
+0.6
+0.0
stress
Thallium(I) acetate 0.001 mg/ml
-0.4
+1.1
-0.4
+0.5
+0.0
nitrogen source
Gly-DL-Asp (N)
-0.8
+1.0
-0.1
+0.8
+0.0
nitrogen source
Gelatin (N)
+0.7
-0.2
-0.1
+1.1
-0.5
dmso control
DMSO control
+1.0
+0.7
-0.1
-0.3
+0.2
stress
1-octen-3-ol 0.4933903333 mM
+1.2
+0.9
+0.0
-0.1
+0.1
stress
1-octen-3-ol 0.5427293333 mM
+1.2
+0.8
+0.1
-0.1
+0.2
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