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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b21464 and SM_b21465 are separated by 100 nucleotides
SM_b21465 and SM_b21466 overlap by 4 nucleotides
SM_b21466 and SM_b21467 are separated by 245 nucleotides
SM_b21467 and SM_b21468 are separated by 207 nucleotides
SM_b21464: SM_b21464 - GntR family transcriptional regulator, at 1,391,174 to 1,391,947
_b21464
SM_b21465: SM_b21465 - HlyD family protein secretion protein, at 1,392,048 to 1,393,367
_b21465
SM_b21466: SM_b21466 - ABC transporter ATP-binding protein, at 1,393,364 to 1,395,124
_b21466
SM_b21467: SM_b21467 - hypothetical protein, at 1,395,370 to 1,395,714
_b21467
SM_b21468: SM_b21468 - hypothetical protein, at 1,395,922 to 1,397,019
_b21468
Group
Condition
SM
_b21464
SM
_b21465
SM
_b21466
SM
_b21467
SM
_b21468
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.4
-0.0
+0.2
-2.1
+0.2
carbon source
D-Ribose (C)
-0.3
+0.1
-0.4
-0.8
-0.0
carbon source
L-Alanine (C)
-1.0
+0.1
+0.1
-0.6
+0.0
nitrogen source
Cytosine (N)
-0.4
-0.3
-0.4
-0.1
+0.0
carbon source
D-Galactose (C)
-0.2
+0.2
-0.4
-0.8
+0.0
nitrogen source
L-Leucine (N)
-0.6
+0.2
+0.3
-0.8
-0.3
carbon source
L-Alanine (C)
-0.6
+0.2
-0.2
-0.7
+0.3
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.6
+0.1
-0.2
-0.2
-0.1
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.5
+0.2
+0.0
-0.5
-0.2
nitrogen source
Uridine (N)
-0.7
-0.0
+0.2
-0.1
-0.3
lb
LB
-0.4
+0.2
-0.1
-0.6
-0.0
nitrogen source
nitrate (N)
-0.5
+0.0
+0.2
-0.4
-0.2
stress
Cisplatin 0.0005 mg/ml
-0.2
+0.1
+0.3
-0.4
-0.2
nitrogen source
Gly-DL-Asp (N)
-0.4
+0.1
+0.3
-0.3
-0.2
nitrogen source
Gelatin (N)
-0.2
+0.2
+0.2
-0.4
-0.3
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.5
-0.3
+0.5
+0.1
-0.2
carbon source
Fumarate (C)
-0.2
+0.2
+0.2
-0.6
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.0
-0.0
+0.6
-0.5
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
-0.1
+0.4
-0.5
+0.4
stress
Paraquat dichloride 0.2 mg/ml
-0.2
+0.4
-0.4
+0.4
-0.1
nitrogen source
L-Asparagine (N)
-0.3
+0.2
+0.5
+0.3
-0.5
r2a control
R2A control for volatile experiments
-0.3
+0.2
+0.3
+0.6
-0.2
stress
Thallium(I) acetate 0.0025 mg/ml
+0.3
+0.1
-0.2
+0.6
-0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.4
-0.1
+0.7
+0.6
+0.0
nitrogen source
D-Glucosamine Hydrochloride (N)
+1.9
-0.1
-0.2
-0.4
-0.4
pH
LB, pH6
+0.4
+0.4
+0.2
+0.1
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.9
-0.0
-0.3
+0.2
-0.0
temperature
LB, 23C
+0.0
+0.1
+0.3
+0.6
-0.2
stress
3-octanone 0.456 mM
+0.3
-0.2
+0.2
+0.8
+0.1
r2a control
R2A control for volatile experiments
+0.3
+0.1
+0.6
+0.1
+0.1
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