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Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b21460 and SM_b21461 are separated by 88 nucleotides
SM_b21461 and SM_b21462 are separated by 35 nucleotides
SM_b21462 and SM_b21463 overlap by 10 nucleotides
SM_b21463 and SM_b21464 are separated by 213 nucleotides
SM_b21460: SM_b21460 - sugar uptake ABC transporter ATP-binding protein, at 1,386,150 to 1,387,262
_b21460
SM_b21461: SM_b21461 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,387,351 to 1,388,613
_b21461
SM_b21462: SM_b21462 - sugar kinase, at 1,388,649 to 1,389,584
_b21462
SM_b21463: SM_b21463 - glycosyl hydrolase, 6-phospho-beta-glucosidase, at 1,389,575 to 1,390,960
_b21463
SM_b21464: SM_b21464 - GntR family transcriptional regulator, at 1,391,174 to 1,391,947
_b21464
Group
Condition
SM
_b21460
SM
_b21461
SM
_b21462
SM
_b21463
SM
_b21464
nitrogen source
L-Arginine (N)
-0.2
+0.0
-0.3
-0.3
-0.7
nutrient
Min media with glucose
-0.0
-0.2
-0.3
-0.1
-0.5
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.1
-0.0
-0.3
-0.1
-0.5
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.0
+0.1
-0.3
+0.0
-0.6
carbon source
D-Glucose (C)
-0.1
-0.1
-0.1
+0.1
-0.5
nitrogen source
L-Histidine (N)
-0.0
+0.3
-0.5
+0.1
-0.5
carbon source
L-Alanine (C)
+0.1
+0.1
-0.0
+0.1
-1.0
carbon source
Methyl beta-D-glucopyranoside (C)
-0.1
+0.0
-0.2
+0.1
-0.5
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.2
-0.0
-0.2
+0.1
-0.3
nitrogen source
L-Leucine (N)
-0.0
+0.1
-0.2
-0.1
-0.6
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.3
-0.0
-0.4
-0.1
+0.2
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.2
-0.0
+0.0
+0.2
-0.5
carbon source
L-Alanine (C)
+0.1
+0.1
-0.2
+0.1
-0.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
+0.0
-0.3
+0.2
-0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
-0.1
-0.2
+0.0
-0.4
nitrogen source
Uridine (N)
+0.1
+0.1
-0.0
+0.1
-0.7
nitrogen source
Cytosine (N)
-0.2
-0.0
+0.3
+0.1
-0.4
carbon source
L-Histidine (C)
+0.0
-0.1
+0.3
+0.2
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
+0.0
+0.1
+0.2
-0.4
stress
3-octanone 0.456 mM
-0.1
+0.1
-0.2
-0.2
+0.3
carbon source
Myristic (C)
+0.4
+0.0
-0.0
+0.2
-0.4
r2a control
R2A control for volatile experiments
-0.2
+0.2
-0.3
+0.2
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.4
-0.0
-0.3
+0.3
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.5
+0.1
-0.1
+0.2
-0.2
carbon source
5-Aminovaleric (C)
+0.2
+0.1
+0.3
+0.1
-0.3
stress
Chlorite 0.1 mM
-0.2
+0.0
+0.4
+0.2
+0.2
carbon source
D-Glucosamine Hydrochloride (C)
+0.0
+0.1
+0.4
-0.0
+0.4
carbon source
D-Maltose (C)
+0.0
-0.0
+0.2
+0.0
+0.8
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.4
+0.1
-0.2
+0.1
+0.9
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.1
-0.0
+0.3
-0.2
+1.9
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