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Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b21429 and SM_b21430 overlap by 7 nucleotides
SM_b21430 and SM_b21431 are separated by 126 nucleotides
SM_b21431 and SM_b21432 are separated by 2 nucleotides
SM_b21432 and SM_b21433 are separated by 105 nucleotides
SM_b21429: SM_b21429 - iron ABC transporter ATP-binding protein, at 1,359,858 to 1,360,619
_b21429
SM_b21430: SM_b21430 - iron ABC transporter permease, at 1,360,613 to 1,361,683
_b21430
SM_b21431: SM_b21431 - hypothetical protein, at 1,361,810 to 1,362,232
_b21431
SM_b21432: SM_b21432 - iron uptake ABC transporter substrate-binding protein precursor, at 1,362,235 to 1,362,942
_b21432
SM_b21433: SM_b21433 - methyl-transferase, S-adenosyl-L-methionine (SAM)-MTase, at 1,363,048 to 1,363,857
_b21433
Group
Condition
SM
_b21429
SM
_b21430
SM
_b21431
SM
_b21432
SM
_b21433
stress
Sisomicin 0.004 mg/ml
-1.1
-0.8
-0.3
-0.9
+0.1
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.7
-0.7
-0.2
-1.3
+0.5
stress
Fusidic 0.0001 mg/ml
-0.3
-0.5
-0.6
-0.5
+0.1
stress
Thallium(I) acetate 0.0025 mg/ml
-0.4
-0.4
-0.1
-0.9
-0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
+0.1
-0.2
-0.6
-0.3
r2a control
R2A control for volatile experiments
+0.1
+0.2
-0.5
-0.5
-0.1
nitrogen source
L-Leucine (N)
+0.1
+0.4
-0.0
-1.0
-0.0
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.1
+0.0
-0.3
-0.5
+0.4
carbon source
succinate (C)
+0.3
-0.1
-0.0
+0.4
-0.5
nitrogen source
L-Serine (N)
-0.1
+0.3
+0.4
-0.3
-0.2
stress
1-octen-3-ol 0.6030326667 mM
+0.2
+0.1
-0.4
+0.6
-0.2
pH
LB, pH7
+0.3
+0.3
+0.3
-0.1
-0.3
stress
6-Pentyl-2H-pyran-2-one 0.4557668333 mM
+0.3
+0.1
-0.1
+0.7
+0.1
stress
3-octanone 0.456 mM
+0.4
+0.1
+0.2
+0.5
-0.2
stress
D-Cycloserine 0.05 mg/ml
+0.3
+0.4
+0.2
+0.4
-0.1
stress
copper (II) chloride 1 mM
+0.3
+0.2
+0.5
-0.1
+0.1
stress
3-octanone 2.655166667 mM
+0.3
+0.4
-0.1
+0.6
+0.0
stress
3-octanone 2.655166667 mM
+0.4
+0.2
+0.1
+0.7
-0.2
stress
3-octanone 0.456 mM
+0.6
+0.3
+0.0
+0.5
-0.0
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.3
+0.1
+0.7
+0.6
-0.2
stress
Paraquat dichloride 0.2 mg/ml
+0.3
+0.2
+0.5
+0.6
-0.1
stress
Chloride 200 mM
+0.6
+0.5
+0.5
+0.6
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.3
+0.5
+0.2
+1.1
-0.0
pH
LB, pH6
+0.9
+0.7
+0.4
+0.5
-0.0
stress
Paraquat dichloride 0.3 mg/ml
+0.6
+0.5
+0.7
+0.9
-0.2
pH
LB, pH6
+0.7
+0.7
+0.6
+0.7
+0.2
stress
Cisplatin 0.001 mg/ml
+0.9
+0.8
+1.1
+1.0
-0.4
stress
Chlorite 0.1 mM
+0.9
+1.0
+1.0
+0.9
-0.2
stress
perchlorate 10 mM
+0.8
+1.1
+1.2
+1.1
-0.3
stress
nitrate 40 mM
+1.0
+0.8
+1.0
+1.2
+0.1
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