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Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b21428 and SM_b21429 are separated by 24 nucleotides
SM_b21429 and SM_b21430 overlap by 7 nucleotides
SM_b21430 and SM_b21431 are separated by 126 nucleotides
SM_b21431 and SM_b21432 are separated by 2 nucleotides
SM_b21428: SM_b21428 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 1,359,270 to 1,359,833
_b21428
SM_b21429: SM_b21429 - iron ABC transporter ATP-binding protein, at 1,359,858 to 1,360,619
_b21429
SM_b21430: SM_b21430 - iron ABC transporter permease, at 1,360,613 to 1,361,683
_b21430
SM_b21431: SM_b21431 - hypothetical protein, at 1,361,810 to 1,362,232
_b21431
SM_b21432: SM_b21432 - iron uptake ABC transporter substrate-binding protein precursor, at 1,362,235 to 1,362,942
_b21432
Group
Condition
SM
_b21428
SM
_b21429
SM
_b21430
SM
_b21431
SM
_b21432
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.9
-0.7
-0.7
-0.2
-1.3
stress
Sisomicin 0.004 mg/ml
-0.4
-1.1
-0.8
-0.3
-0.9
stress
Fusidic 0.0001 mg/ml
-1.0
-0.3
-0.5
-0.6
-0.5
stress
Thallium(I) acetate 0.0025 mg/ml
-0.0
-0.4
-0.4
-0.1
-0.9
r2a control
R2A control for volatile experiments
-0.2
+0.1
+0.2
-0.5
-0.5
pH
LB, pH8
-0.9
+0.3
+0.3
-0.0
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.5
+0.3
+0.1
-0.2
-0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+1.0
-0.2
-0.3
+0.1
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.6
+0.3
-0.1
+0.2
-0.4
stress
6-Pentyl-2H-pyran-2-one 0.4557668333 mM
+0.4
+0.3
+0.1
-0.1
+0.7
stress
Thallium(I) acetate 0.001 mg/ml
+0.6
-0.1
+0.0
+0.4
+0.4
stress
3-octanone 2.655166667 mM
+0.2
+0.3
+0.4
-0.1
+0.6
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.1
+0.3
+0.1
+0.7
+0.6
stress
Cisplatin 0.0005 mg/ml
+0.4
+0.4
+0.3
+0.4
-0.0
stress
Nickel (II) chloride 1 mM
+0.7
+0.2
-0.0
+0.4
+0.3
temperature
LB, 23C
+0.5
+0.1
+0.3
+0.3
+0.4
stress
copper (II) chloride 1 mM
+0.6
+0.3
+0.2
+0.5
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.3
+0.3
+0.5
+0.2
+1.1
stress
3-octanone 2.655166667 mM
+0.2
+0.4
+0.2
+0.1
+0.7
stress
3-octanone 0.456 mM
+0.5
+0.6
+0.3
+0.0
+0.5
stress
Paraquat dichloride 0.2 mg/ml
+0.5
+0.3
+0.2
+0.5
+0.6
stress
D-Cycloserine 0.05 mg/ml
+1.0
+0.3
+0.4
+0.2
+0.4
stress
Chloride 200 mM
+0.4
+0.6
+0.5
+0.5
+0.6
pH
LB, pH6
+0.5
+0.7
+0.7
+0.6
+0.7
pH
LB, pH6
+0.8
+0.9
+0.7
+0.4
+0.5
stress
Chlorite 0.1 mM
-0.3
+0.9
+1.0
+1.0
+0.9
stress
Paraquat dichloride 0.3 mg/ml
+0.8
+0.6
+0.5
+0.7
+0.9
stress
nitrate 40 mM
+0.4
+1.0
+0.8
+1.0
+1.2
stress
Cisplatin 0.001 mg/ml
+0.9
+0.9
+0.8
+1.1
+1.0
stress
perchlorate 10 mM
+0.7
+0.8
+1.1
+1.2
+1.1
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