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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b21424 and SM_b21425 are separated by 46 nucleotides
SM_b21425 and SM_b21426 are separated by 1 nucleotides
SM_b21426 and SM_b21427 overlap by 1 nucleotides
SM_b21427 and SM_b21428 are separated by 155 nucleotides
SM_b21424: SM_b21424 - esterase or acylase, at 1,355,223 to 1,356,959
_b21424
SM_b21425: SM_b21425 - hypothetical protein, at 1,357,006 to 1,357,782
_b21425
SM_b21426: SM_b21426 - sugar nucleotide oxidoreductaseepimerase, at 1,357,784 to 1,358,626
_b21426
SM_b21427: SM_b21427 - acetyltransferase, at 1,358,626 to 1,359,114
_b21427
SM_b21428: SM_b21428 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 1,359,270 to 1,359,833
_b21428
Group
Condition
SM
_b21424
SM
_b21425
SM
_b21426
SM
_b21427
SM
_b21428
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.2
-1.9
-2.1
-1.6
-0.9
stress
Fusidic 0.0001 mg/ml
-0.0
-1.1
-1.1
-0.7
-1.0
pH
LB, pH8
-0.2
-0.8
-0.6
-0.5
-0.9
pH
LB, pH8
+0.1
-0.7
-0.5
-0.5
-0.6
stress
Sisomicin 0.004 mg/ml
-0.2
-0.4
-0.4
-0.5
-0.4
stress
Aluminum chloride
+0.2
-0.5
-0.4
-0.1
-0.6
nitrogen source
Cytosine (N)
-0.2
-0.2
+0.2
-0.7
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.0
-0.3
+0.2
+0.7
-0.3
pH
LB, pH6
-0.1
+0.2
+0.3
+0.5
+0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.0
-0.2
+0.0
+0.4
+1.0
stress
nitrate 40 mM
+0.2
+0.4
+0.5
+0.0
+0.4
stress
Nickel (II) chloride 0.5 mM
+0.1
+0.4
+0.2
+0.3
+0.5
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.0
+0.2
+0.4
+0.5
+0.6
temperature
LB, 30C
-0.1
+0.5
+0.4
+0.4
+0.5
lb
LB
-0.3
+0.5
+0.5
+0.6
+0.5
temperature
LB, 23C
-0.2
+0.5
+0.6
+0.4
+0.5
stress
Cisplatin 0.001 mg/ml
-0.2
+0.5
+0.5
+0.1
+0.9
pH
LB, pH6
+0.1
+0.2
+0.1
+0.6
+0.8
stress
Paraquat dichloride 0.2 mg/ml
-0.2
+0.5
+0.6
+0.5
+0.4
temperature
LB, 23C
-0.1
+0.4
+0.6
+0.6
+0.5
stress
Paraquat dichloride 0.2 mg/ml
-0.3
+0.7
+0.7
+0.4
+0.5
stress
Nickel (II) chloride 1 mM
+0.1
+0.6
+0.4
+0.2
+0.7
stress
Paraquat dichloride 0.05 mg/ml
-0.2
+0.6
+0.5
+0.5
+0.5
stress
Thallium(I) acetate 0.001 mg/ml
+0.1
+0.6
+0.5
+0.2
+0.6
stress
Paraquat dichloride 0.3 mg/ml
-0.3
+0.6
+0.6
+0.4
+0.8
lb
LB
+0.0
+0.5
+0.7
+0.6
+0.5
lb
LB
-0.1
+0.6
+0.7
+0.6
+0.6
stress
perchlorate 10 mM
-0.2
+0.6
+0.8
+0.4
+0.7
stress
copper (II) chloride 1 mM
+0.1
+0.6
+0.6
+0.7
+0.6
stress
D-Cycloserine 0.05 mg/ml
-0.2
+0.8
+0.8
+0.6
+1.0
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