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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b21414 and SM_b21415 are separated by 42 nucleotides
SM_b21415 and SM_b21416 are separated by 242 nucleotides
SM_b21416 and SM_b21417 overlap by 4 nucleotides
SM_b21417 and SM_b21418 are separated by 6 nucleotides
SM_b21414: SM_b21414 - amino acid decarboxylase, at 1,342,802 to 1,344,223
_b21414
SM_b21415: SM_b21415 - oxidoreductase, oxygen dependent, FAD-dependent protein, at 1,344,266 to 1,345,705
_b21415
SM_b21416: SM_b21416 - glucose-1-phosphate cytidylyltransferase, at 1,345,948 to 1,346,715
_b21416
SM_b21417: SM_b21417 - CDP-glucose 4,6-dehydratase, at 1,346,712 to 1,347,782
_b21417
SM_b21418: SM_b21418 - NDP-hexose 3-C-methyltransferase, at 1,347,789 to 1,349,021
_b21418
Group
Condition
SM
_b21414
SM
_b21415
SM
_b21416
SM
_b21417
SM
_b21418
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.1
-0.0
-2.1
-2.5
-2.1
stress
Fusidic 0.0001 mg/ml
+0.3
-0.1
-1.1
-1.0
-1.3
stress
Sisomicin 0.004 mg/ml
-0.2
-0.4
-0.5
-0.9
-0.5
pH
LB, pH8
+0.3
-0.2
-0.6
-1.0
-0.9
pH
LB, pH8
+0.2
-0.3
-0.5
-0.8
-0.8
stress
Aluminum chloride
+0.2
+0.1
-0.4
-0.6
-0.4
nitrogen source
L-Arginine (N)
-0.9
-0.0
+0.2
+0.2
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.5
-0.2
+0.5
+0.2
+0.2
stress
Nickel (II) chloride 0.5 mM
-0.3
-0.2
+0.4
+0.2
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.6
+0.2
-0.1
-0.1
-0.3
stress
nitrate 40 mM
-0.3
-0.2
+0.6
+0.5
+0.4
lb
LB
-0.5
-0.1
+0.5
+0.4
+0.6
stress
Thallium(I) acetate 0.0025 mg/ml
-0.2
-0.2
+0.6
+0.5
+0.2
stress
Paraquat dichloride 0.2 mg/ml
-0.3
-0.3
+0.5
+0.5
+0.6
lb
LB
+0.0
-0.4
+0.7
+0.4
+0.4
stress
Thallium(I) acetate 0.001 mg/ml
+0.2
-0.2
+0.7
+0.5
+0.2
pH
LB, pH6
+0.1
-0.3
+0.4
+0.6
+0.4
stress
copper (II) chloride 1 mM
+0.3
-0.2
+0.5
+0.3
+0.4
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.3
+0.2
+0.3
+0.3
+0.3
lb
LB
-0.0
-0.2
+0.5
+0.6
+0.5
temperature
LB, 23C
-0.1
-0.0
+0.4
+0.6
+0.5
stress
Nickel (II) chloride 1 mM
+0.6
+0.1
+0.6
+0.0
+0.1
stress
Paraquat dichloride 0.05 mg/ml
+0.2
-0.5
+0.6
+0.6
+0.5
stress
Paraquat dichloride 0.2 mg/ml
-0.0
-0.4
+0.6
+0.6
+0.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.8
+0.2
+0.4
+0.0
+0.1
stress
Paraquat dichloride 0.3 mg/ml
+0.2
-0.3
+0.5
+0.5
+0.5
stress
copper (II) chloride 1 mM
-0.3
-0.2
+0.7
+0.8
+0.5
stress
perchlorate 10 mM
-0.1
-0.1
+0.7
+0.3
+0.8
stress
D-Cycloserine 0.05 mg/ml
-0.3
-0.2
+0.7
+0.8
+0.7
stress
Cisplatin 0.001 mg/ml
+0.7
+0.0
+0.8
+0.5
+0.5
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