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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b21360 and SM_b21361 are separated by 65 nucleotides
SM_b21361 and SM_b21362 are separated by 123 nucleotides
SM_b21362 and SM_b21668 are separated by 140 nucleotides
SM_b21668 and SM_b21363 are separated by 57 nucleotides
SM_b21360: SM_b21360 - LysR family transcriptional regulator, at 1,024,799 to 1,024,981
_b21360
SM_b21361: SM_b21361 - hypothetical protein, at 1,025,047 to 1,025,547
_b21361
SM_b21362: SM_b21362 - hypothetical protein, at 1,025,671 to 1,026,111
_b21362
SM_b21668: SM_b21668 - hypothetical protein, at 1,026,252 to 1,026,479
_b21668
SM_b21363: SM_b21363 - hypothetical protein, at 1,026,537 to 1,027,631
_b21363
Group
Condition
SM
_b21360
SM
_b21361
SM
_b21362
SM
_b21668
SM
_b21363
stress
Paraquat dichloride 0.3 mg/ml
N.D.
-0.8
-0.2
-0.9
-0.1
stress
Polymyxin B sulfate 0.00005 mg/ml
N.D.
-0.4
-0.4
-1.1
+0.1
nutrient
Min media with glucose
N.D.
-0.3
-0.2
-0.4
-0.2
stress
6-Pentyl-2H-pyran-2-one 0.4557668333 mM
N.D.
-0.0
-0.4
-0.6
-0.1
stress
3-octanone 0.456 mM
N.D.
-0.1
-0.2
-0.7
-0.1
stress
Paraquat dichloride 0.2 mg/ml
N.D.
-0.4
-0.0
-0.7
+0.0
carbon source
D-Glucose (C)
N.D.
+0.1
-0.4
-0.6
-0.0
carbon source
Protocatechuic Acid (C)
N.D.
+0.0
-0.5
-0.5
+0.0
r2a control
R2A control for volatile experiments
N.D.
-0.6
-0.5
+0.4
-0.1
pH
LB, pH6
N.D.
-0.8
-0.2
+0.0
+0.2
r2a control
R2A control for volatile experiments
N.D.
-0.6
-0.3
+0.1
+0.0
stress
nitrate 40 mM
N.D.
-0.4
-0.2
-0.2
+0.2
carbon source
L-Lysine (C)
N.D.
+0.2
-0.6
-0.3
+0.2
stress
Chlorite 0.1 mM
N.D.
-0.3
+0.2
-0.6
+0.3
carbon source
L-Arabinose (C)
N.D.
-0.4
-0.4
+0.3
-0.0
nitrogen source
L-Arginine (N)
N.D.
+0.7
-0.4
-0.7
-0.1
stress
Fusidic 0.0001 mg/ml
N.D.
-0.1
+0.0
-0.6
+0.2
nitrogen source
L-Asparagine (N)
N.D.
+0.5
-0.6
+0.0
-0.3
stress
Aluminum chloride
N.D.
+0.1
+0.2
-0.4
-0.3
stress
Cisplatin 0.001 mg/ml
N.D.
+0.1
-0.5
-0.3
+0.2
lb
LB
N.D.
-0.0
+0.3
-0.6
+0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
-0.3
-0.1
-0.4
+0.4
stress
copper (II) chloride 1 mM
N.D.
-0.6
+0.3
+0.1
-0.0
stress
Paraquat dichloride 0.2 mg/ml
N.D.
-0.2
-0.2
+0.4
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
-0.1
+0.3
-0.5
+0.1
nitrogen source
D-Glucosamine Hydrochloride (N)
N.D.
+0.4
-0.4
+0.2
-0.4
nitrogen source
Uridine (N)
N.D.
+0.4
-0.4
-0.1
+0.1
nitrogen source
Gelatin (N)
N.D.
+0.6
-0.4
+0.0
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
+0.1
-0.5
+0.6
-0.0
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
N.D.
+0.6
+0.1
+0.1
+0.6
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