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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b21353 and SM_b21354 are separated by 30 nucleotides
SM_b21354 and SM_b21355 are separated by 158 nucleotides
SM_b21355 and SM_b21356 are separated by 94 nucleotides
SM_b21356 and SM_b21357 are separated by 97 nucleotides
SM_b21353: SM_b21353 - periplasmic C4-dicarboxylate transport protein, at 1,018,487 to 1,019,464
_b21353
SM_b21354: SM_b21354 - glucuronate isomerase, at 1,019,495 to 1,020,904
_b21354
SM_b21355: SM_b21355 - oxidoreductase, at 1,021,063 to 1,022,082
_b21355
SM_b21356: SM_b21356 - hypothetical protein, at 1,022,177 to 1,023,169
_b21356
SM_b21357: SM_b21357 - hypothetical protein, at 1,023,267 to 1,023,785
_b21357
Group
Condition
SM
_b21353
SM
_b21354
SM
_b21355
SM
_b21356
SM
_b21357
nitrogen source
L-Histidine (N)
-0.3
+0.4
-0.2
+0.0
-1.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.3
+0.1
-0.1
-0.1
-0.7
stress
3-octanone 5.310333333 mM
-0.1
-0.2
+0.2
-0.4
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
-0.0
-0.0
-0.4
-0.5
nitrogen source
L-Arginine (N)
+0.3
-0.2
-0.2
-0.3
-0.3
carbon source
D-Xylose (C)
-0.2
+0.0
+0.0
-0.2
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.0
-0.3
-0.2
+0.0
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.0
+0.0
+0.2
-0.3
-0.7
stress
nitrate 40 mM
+0.1
+0.1
+0.0
-0.0
-1.0
r2a control
R2A control for volatile experiments
+0.1
-0.1
-0.0
-0.5
-0.2
carbon source
L-Lysine (C)
-0.4
-0.1
-0.1
-0.2
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
-0.1
-0.5
+0.1
-0.3
stress
Aluminum chloride
+0.2
+0.1
-0.1
-0.3
-0.3
carbon source
Myristic (C)
-0.2
+0.1
+0.1
-0.1
-0.3
stress
Sisomicin 0.004 mg/ml
+0.0
-0.1
+0.4
-0.0
-0.7
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
+0.1
+0.2
-0.1
-0.6
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.1
+0.1
-0.4
-0.2
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
-0.2
+0.0
+0.2
-0.3
r2a control
R2A control for volatile experiments
-0.0
-0.1
-0.1
-0.4
+0.4
carbon source
Sucrose (C)
+0.1
+0.1
-0.1
+0.3
-0.4
nutrient
L-Histidine
+0.1
+0.0
+0.3
+0.3
-0.5
pH
LB, pH6
+0.2
+0.3
+0.4
-0.5
-0.2
carbon source
D-Glucose (C)
-0.2
+0.2
-0.2
+0.1
+0.3
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.1
-0.2
+0.1
-0.1
+0.4
stress
Cisplatin 0.001 mg/ml
+0.0
-0.1
+0.3
+0.3
-0.3
stress
Paraquat dichloride 0.2 mg/ml
+0.3
-0.1
+0.4
-0.0
-0.1
nitrogen source
Gelatin (N)
+0.2
-0.0
+0.2
+0.4
-0.3
nutrient
L-Lysine
+0.1
+0.2
+0.5
-0.0
-0.2
stress
perchlorate 10 mM
+0.6
+0.3
-0.0
+0.1
-0.2
stress
Chlorite 0.1 mM
+0.4
+0.2
+0.2
-0.1
-0.2
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