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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b21335 and SM_b21336 are separated by 247 nucleotides
SM_b21336 and SM_b21337 are separated by 126 nucleotides
SM_b21337 and SM_b21338 are separated by 3 nucleotides
SM_b21338 and SM_b21339 are separated by 1 nucleotides
SM_b21335: SM_b21335 - hypothetical protein, at 1,001,488 to 1,002,567
_b21335
SM_b21336: SM_b21336 - AraC family transcriptional regulator, at 1,002,815 to 1,003,759
_b21336
SM_b21337: SM_b21337 - iron-sulfur-binding protein, at 1,003,886 to 1,004,548
_b21337
SM_b21338: SM_b21338 - molybdopterin-binding protein, at 1,004,552 to 1,005,457
_b21338
SM_b21339: SM_b21339 - N-terminal part of the catalytic subunit of an oxidoreductase like aldehyde oxidase or xanthine dehydrogenase, at 1,005,459 to 1,005,791
_b21339
Group
Condition
SM
_b21335
SM
_b21336
SM
_b21337
SM
_b21338
SM
_b21339
r2a control
R2A control for volatile experiments
-0.1
-0.3
N.D.
-0.5
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
-0.1
N.D.
-0.4
-0.5
pH
LB, pH6
-0.1
-0.2
N.D.
-0.4
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.0
-0.5
N.D.
-0.3
-0.1
stress
copper (II) chloride 1 mM
-0.4
+0.2
N.D.
-0.4
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
-0.2
N.D.
-0.4
+0.1
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.1
+0.1
N.D.
-0.4
-0.4
stress
Aluminum chloride
+0.4
+0.2
N.D.
-0.9
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
+0.3
N.D.
-0.9
-0.2
stress
Nickel (II) chloride 1 mM
+0.1
+0.2
N.D.
-0.6
-0.1
stress
1-octen-3-ol 0.4933903333 mM
+0.2
-0.6
N.D.
-0.1
+0.1
stress
Paraquat dichloride 0.3 mg/ml
+0.1
+0.2
N.D.
-0.4
-0.2
nitrogen source
Gelatin (N)
+0.3
-0.2
N.D.
-0.4
+0.2
lb
LB
-0.3
+0.2
N.D.
+0.2
-0.3
nitrogen source
L-Leucine (N)
+0.1
+0.2
N.D.
-0.2
-0.3
stress
A22 0.02 mg/ml
-0.2
+0.2
N.D.
+0.2
-0.3
nutrient
L-Histidine
+0.1
+0.3
N.D.
-0.5
+0.0
stress
Chlorite 0.1 mM
+0.6
-0.1
N.D.
-0.5
-0.1
r2a control
R2A control for volatile experiments
+0.4
+0.1
N.D.
-0.4
+0.0
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.3
+0.2
N.D.
-0.1
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.4
+0.2
N.D.
-0.3
+0.1
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.3
-0.4
N.D.
+0.1
+0.4
lb
LB
+0.0
-0.0
N.D.
+0.6
-0.3
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.1
+0.3
N.D.
-0.2
+0.5
nitrogen source
L-Serine (N)
+0.4
+0.1
N.D.
-0.3
+0.3
stress
Cisplatin 0.001 mg/ml
-0.1
+0.6
N.D.
+0.2
-0.3
nitrogen source
L-Histidine (N)
+0.5
-0.0
N.D.
-0.1
+0.4
nitrogen source
L-Arginine (N)
+0.6
-0.3
N.D.
+0.0
+0.4
nitrogen source
Uridine (N)
+0.5
+0.3
N.D.
-0.2
+0.4
nitrogen source
L-Asparagine (N)
+0.7
+0.3
N.D.
+0.0
+0.5
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