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Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b21313 and SM_b21314 are separated by 130 nucleotides
SM_b21314 and SM_b21315 are separated by 274 nucleotides
SM_b21315 and SM_b21316 overlap by 4 nucleotides
SM_b21316 and SM_b21317 are separated by 196 nucleotides
SM_b21313: SM_b21313 - bifunctional glycosyltransferase, at 977,203 to 979,452
_b21313
SM_b21314: SM_b21314 - secreted calcium-binding protein, at 979,583 to 980,242
_b21314
SM_b21315: SM_b21315 - HlyD family protein secretion protein, at 980,517 to 981,938
_b21315
SM_b21316: SM_b21316 - ABC transporter ATP-binding protein/permease, at 981,935 to 983,704
_b21316
SM_b21317: SM_b21317 - transcriptional activator of exopolysaccharide II synthesis, MarR family protein, at 983,901 to 984,485
_b21317
Group
Condition
SM
_b21313
SM
_b21314
SM
_b21315
SM
_b21316
SM
_b21317
stress
Aluminum chloride
-0.3
-0.3
-0.3
-0.2
-0.1
nitrogen source
L-Leucine (N)
-0.2
-0.2
-0.4
-0.2
-0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
-0.3
-0.1
+0.1
-0.5
nitrogen source
NAG (N)
-0.3
-0.4
-0.1
-0.2
+0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.0
-0.6
-0.3
-0.3
+0.3
nitrogen source
L-Glutamine (N)
-0.4
-0.2
-0.1
-0.1
-0.1
stress
Nickel (II) chloride 1 mM
-0.3
+0.0
-0.1
-0.2
-0.3
nitrogen source
L-Asparagine (N)
-0.5
-0.4
-0.1
-0.3
+0.5
lb no stress control
LB no stress control
-0.1
-0.3
-0.1
-0.1
-0.2
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.2
-0.3
-0.2
-0.1
+0.0
carbon source
D-Mannitol (C)
+0.0
-0.3
-0.0
+0.1
-0.6
carbon source
D-Mannose (C)
-0.1
-0.1
-0.1
+0.1
-0.4
carbon source
D-Mannitol (C)
-0.1
-0.2
-0.1
+0.1
-0.3
pH
LB, pH8
-0.3
-0.3
+0.0
-0.2
+0.2
nitrogen source
Gelatin (N)
-0.4
-0.1
-0.1
-0.1
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
-0.1
+0.3
-0.1
-0.2
nitrogen source
Uridine (N)
-0.2
-0.2
-0.2
-0.1
+0.3
nitrogen source
Cytosine (N)
-0.2
+0.0
-0.1
-0.5
+0.5
nitrogen source
L-Histidine (N)
-0.4
-0.1
+0.2
-0.2
+0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
+0.1
+0.4
+0.1
-0.6
nitrogen source
L-Serine (N)
-0.3
+0.1
-0.0
-0.2
+0.3
carbon source
methyl-beta-D-xylopyranoside (C)
+0.1
-0.3
+0.0
-0.1
+0.3
stress
Chlorite 0.1 mM
-0.3
-0.3
-0.1
-0.1
+0.8
stress
Cisplatin 0.0005 mg/ml
-0.2
+0.1
+0.2
-0.3
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
-0.2
+0.3
-0.1
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.1
-0.4
+0.2
-0.0
+0.3
nitrogen source
L-Arginine (N)
+0.1
-0.0
+0.2
-0.0
+0.6
r2a control
R2A control for volatile experiments
+0.1
+0.4
-0.0
+0.2
+0.3
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.4
+0.0
+0.3
-0.0
+0.3
stress
Paraquat dichloride 0.2 mg/ml
+0.1
+0.3
+0.4
+0.1
+0.3
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