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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b21215 and SM_b21307 are separated by 117 nucleotides
SM_b21307 and SM_b21308 are separated by 44 nucleotides
SM_b21308 and SM_b21309 overlap by 4 nucleotides
SM_b21309 and SM_b21310 are separated by 8 nucleotides
SM_b21215: SM_b21215 - dipeptide uptake ABC transporter substrate-binding protein precursor, at 968,095 to 969,702
_b21215
SM_b21307: SM_b21307 - hypothetical protein, at 969,820 to 970,797
_b21307
SM_b21308: SM_b21308 - glycosyltransferase, forming alpha glycosyl linkages protein, at 970,842 to 972,164
_b21308
SM_b21309: SM_b21309 - hypothetical protein, at 972,161 to 974,377
_b21309
SM_b21310: SM_b21310 - hypothetical protein, at 974,386 to 975,090
_b21310
Group
Condition
SM
_b21215
SM
_b21307
SM
_b21308
SM
_b21309
SM
_b21310
carbon source
acetate (C)
+0.0
+0.1
-0.3
-0.3
-0.6
temperature
LB, 23C
-0.1
-0.0
-0.4
-0.1
-0.3
nitrogen source
L-Arginine (N)
-0.1
+0.3
-0.3
-0.1
-0.8
carbon source
pipercolic (C)
-0.1
+0.1
-0.4
-0.2
-0.3
nitrogen source
NAG (N)
+0.2
-0.1
-0.2
-0.0
-0.5
pH
LB, pH6
+0.1
+0.2
-0.4
-0.1
-0.5
carbon source
5-Aminovaleric (C)
+0.1
+0.0
+0.2
-0.3
-0.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
+0.1
-0.7
-0.1
+0.3
r2a control
R2A control for volatile experiments
-0.2
-0.1
+0.5
+0.1
-0.8
carbon source
5-Aminovaleric (C)
-0.1
+0.2
+0.2
-0.3
-0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
-0.1
-0.6
-0.0
+0.3
lb no stress control
LB no stress control
-0.3
-0.1
-0.3
-0.1
+0.3
nitrogen source
nitrate (N)
+0.3
-0.2
+0.2
-0.1
-0.5
lb
LB
+0.0
-0.0
-0.6
-0.1
+0.5
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.0
-0.1
+0.2
+0.2
-0.5
stress
Paraquat dichloride 0.2 mg/ml
+0.2
-0.0
+0.3
-0.1
-0.4
nitrogen source
Gly-DL-Asp (N)
+0.3
-0.0
+0.3
-0.1
-0.6
stress
Aluminum chloride
+0.1
-0.2
+0.2
-0.4
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
-0.1
-0.4
+0.2
+0.5
carbon source
D-Trehalose (C)
+0.1
+0.1
-0.2
-0.2
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
+0.0
-0.5
+0.3
+0.0
nitrogen source
L-Serine (N)
+0.1
+0.3
+0.2
+0.1
-0.4
r2a control
R2A control
-0.1
-0.1
-0.3
+0.1
+0.7
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.1
+0.0
+0.4
+0.4
-0.1
nitrogen source
Gelatin (N)
+0.3
+0.1
+0.4
-0.0
-0.2
carbon source
Beta-Lactose (C)
-0.1
+0.1
+0.2
-0.1
+0.6
stress
copper (II) chloride 1 mM
+0.2
-0.3
+0.6
-0.2
+0.5
carbon source
D-Glucose (C)
+0.1
+0.2
+0.2
-0.1
+0.4
stress
Nickel (II) chloride 1 mM
+0.2
+0.1
+0.2
+0.2
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
+0.1
+0.5
-0.2
+0.7
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