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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b21300 and SM_b21301 are separated by 4 nucleotides
SM_b21301 and SM_b21302 are separated by 124 nucleotides
SM_b21302 and SM_b21303 are separated by 20 nucleotides
SM_b21303 and SM_b21304 are separated by 33 nucleotides
SM_b21300: SM_b21300 - deoxyribose-phosphate aldolase, at 881,501 to 882,505
_b21300
SM_b21301: SM_b21301 - ly membrane-anchored aldehyde dehydrogenase, at 882,510 to 884,894
_b21301
SM_b21302: SM_b21302 - hypothetical protein, at 885,019 to 885,474
_b21302
SM_b21303: SM_b21303 - hypothetical protein, at 885,495 to 885,923
_b21303
SM_b21304: SM_b21304 - NG,NG-dimethylarginine dimethylaminohydrolase (dimethylargininase) protein, at 885,957 to 886,751
_b21304
Group
Condition
SM
_b21300
SM
_b21301
SM
_b21302
SM
_b21303
SM
_b21304
stress
Aluminum chloride
-0.7
-0.1
-1.0
-0.7
-0.0
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.8
+0.0
-0.3
-1.0
+0.5
stress
Nickel (II) chloride 1 mM
-0.5
-0.4
-0.3
-0.2
-0.0
carbon source
L-Histidine (C)
-0.5
-0.4
-0.1
-0.2
+0.0
nitrogen source
L-Glutamine (N)
-0.2
-0.1
-0.7
+0.1
-0.2
nitrogen source
L-Leucine (N)
-0.5
-0.2
-0.3
-0.0
+0.2
stress
Chlorite 0.1 mM
-0.2
-0.1
-0.4
-0.3
+0.2
lb
LB
+0.2
+0.1
-0.2
-0.4
-0.2
stress
Cisplatin 0.001 mg/ml
+0.3
-0.2
-0.3
+0.2
-0.5
stress
D-Cycloserine 0.05 mg/ml
-0.3
+0.0
-0.4
-0.2
+0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
-0.1
+0.5
-0.5
+0.1
nitrogen source
Cytosine (N)
+0.4
-0.1
-0.1
-0.6
+0.3
stress
copper (II) chloride 1 mM
+0.4
-0.2
+0.0
-0.5
+0.3
stress
6-Pentyl-2H-pyran-2-one 0.4557668333 mM
+0.2
+0.3
+0.3
-0.2
-0.5
stress
Paraquat dichloride 0.2 mg/ml
+0.3
-0.3
+0.4
-0.6
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.2
-0.1
-0.4
+0.1
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
+0.1
-0.2
-0.6
+0.7
nitrogen source
L-Arginine (N)
+0.4
-0.1
-0.5
-0.1
+0.6
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
+0.3
+0.2
+0.5
+0.1
-0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.0
+0.4
+0.1
-0.4
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.9
-0.0
-0.2
+0.2
-0.3
nutrient
L-Lysine
+0.3
+0.1
+0.3
-0.2
+0.3
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.2
-0.1
+0.2
-0.1
+0.8
r2a control
R2A control for volatile experiments
-0.3
+0.1
+0.5
+0.4
+0.3
stress
Paraquat dichloride 0.2 mg/ml
-0.1
+0.1
-0.1
+0.2
+1.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
+0.0
-0.1
+0.3
+0.7
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
+0.2
+0.3
+0.4
-0.1
+0.2
nitrogen source
L-Asparagine (N)
+1.0
+0.1
+0.5
-0.2
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.9
+0.2
+0.5
-0.4
+0.2
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.0
+0.2
+0.5
+0.2
+0.5
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