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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b21271 and SM_b21272 are separated by 147 nucleotides
SM_b21272 and SM_b21273 overlap by 4 nucleotides
SM_b21273 and SM_b21274 are separated by 16 nucleotides
SM_b21274 and SM_b21275 overlap by 4 nucleotides
SM_b21271: SM_b21271 - nucleotide-binding protein, at 845,080 to 845,829
_b21271
SM_b21272: SM_b21272 - LacI family transcriptional regulator, at 845,977 to 847,047
_b21272
SM_b21273: SM_b21273 - spermidineputrescine ABC transporter substrate-binding protein precursor, at 847,044 to 848,066
_b21273
SM_b21274: SM_b21274 - spermidine/putrescine ABC transporter permease, at 848,083 to 848,982
_b21274
SM_b21275: SM_b21275 - spermidineputrescine ABC transporter permease, at 848,979 to 849,758
_b21275
Group
Condition
SM
_b21271
SM
_b21272
SM
_b21273
SM
_b21274
SM
_b21275
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.4
-0.5
+0.1
-0.1
-0.1
lb no stress control
LB no stress control
+0.1
-0.6
-0.2
-0.1
+0.2
nitrogen source
NAG (N)
-0.2
+0.4
-0.7
+0.1
-0.2
stress
Cisplatin 0.001 mg/ml
+0.2
-0.9
-0.3
+0.2
+0.1
stress
copper (II) chloride 1 mM
+0.2
-0.3
-0.4
+0.1
-0.3
stress
Nickel (II) chloride 1 mM
-0.3
+0.3
-0.4
+0.0
-0.2
dmso control
DMSO control
+0.3
-0.5
+0.1
-0.3
-0.1
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
+0.7
-0.8
+0.1
-0.2
-0.1
lb no stress control
LB no stress control
+0.4
-0.4
-0.1
-0.1
-0.1
carbon source
Myristic (C)
-0.6
-0.3
+0.3
+0.1
+0.3
r2a control
R2A control for volatile experiments
-0.4
-0.4
+0.3
+0.3
-0.1
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
+0.6
-0.5
+0.1
-0.4
+0.1
stress
3-octanone 2.655166667 mM
+0.5
-0.3
+0.0
-0.1
-0.2
stress
6-Pentyl-2H-pyran-2-one 0.4557668333 mM
+0.5
-0.6
-0.0
-0.1
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.6
+0.2
+0.2
+0.2
+0.0
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
+0.6
-0.4
-0.0
+0.1
-0.2
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.0
+0.6
-0.3
+0.1
-0.3
nitrogen source
L-Histidine (N)
+0.4
-0.1
-0.5
+0.6
-0.1
r2a control
R2A control for volatile experiments
-0.2
-0.1
+0.1
+0.5
+0.2
nitrogen source
Gelatin (N)
+0.3
+0.3
+0.2
+0.1
-0.4
pH
LB, pH6
-0.5
+0.2
+0.2
+0.3
+0.3
nitrogen source
L-Arginine (N)
-0.1
+0.7
-0.2
+0.3
-0.2
temperature
LB, 30C
+0.2
+0.3
-0.3
+0.3
+0.1
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.3
+0.5
+0.2
-0.1
-0.2
carbon source
L-Arabinose (C)
+0.1
-0.2
+0.5
+0.1
+0.4
stress
D-Cycloserine 0.05 mg/ml
+0.6
+0.4
+0.1
+0.2
-0.1
stress
Fusidic 0.0001 mg/ml
+0.3
+0.6
-0.1
+0.3
+0.1
carbon source
acetate (C)
+0.3
+0.2
+0.3
+0.2
+0.2
stress
perchlorate 10 mM
+0.4
+0.3
+0.4
+0.4
-0.0
stress
copper (II) chloride 1 mM
+0.2
+0.2
+0.5
+0.3
+0.3
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