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Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b21218 and SM_b21219 are separated by 2 nucleotides
SM_b21219 and SM_b21220 overlap by 1 nucleotides
SM_b21220 and SM_b21221 are separated by 242 nucleotides
SM_b21221 and SM_b21222 are separated by 224 nucleotides
SM_b21218: SM_b21218 - glucosamine-6-phosphate deaminase, isomerizing (EC 3.5.99.6)
(from data)
, at 780,746 to 781,765
_b21218
SM_b21219: SM_b21219 - ABC transporter for D-Glucosamine, permease component 1
(from data)
, at 781,768 to 782,613
_b21219
SM_b21220: SM_b21220 - ABC transporter for D-Glucosamine, permease component 2
(from data)
, at 782,613 to 783,494
_b21220
SM_b21221: SM_b21221 - ABC transporter for D-Glucosamine, periplasmic substrate-binding protein
(from data)
, at 783,737 to 784,975
_b21221
SM_b21222: SM_b21222 - transcriptional regulator, at 785,200 to 786,429
_b21222
Group
Condition
SM
_b21218
SM
_b21219
SM
_b21220
SM
_b21221
SM
_b21222
nitrogen source
D-Glucosamine Hydrochloride (N)
-3.1
-3.5
-2.6
-2.6
+2.7
carbon source
D-Glucosamine Hydrochloride (C)
-1.2
-0.8
-0.3
-0.6
+0.9
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.5
-0.2
+0.0
-0.0
-1.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-1.4
-0.3
+0.2
-0.0
-0.0
nitrogen source
L-Arginine (N)
+0.0
-0.2
-0.2
-0.0
-1.1
stress
Sisomicin 0.004 mg/ml
-0.6
-0.1
+0.1
-0.2
-0.6
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.5
-0.3
-0.2
-0.0
-0.4
carbon source
Lactitol (C)
-0.5
+0.1
-0.4
+0.1
-0.6
stress
Cisplatin 0.001 mg/ml
-1.1
-0.1
+0.2
-0.0
-0.3
nutrient
L-Histidine
-0.6
+0.1
-0.1
-0.1
-0.4
carbon source
methyl-beta-D-xylopyranoside (C)
-0.5
-0.1
-0.3
-0.0
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.1
-0.2
-0.0
+0.2
+0.1
pH
LB, pH6
-0.7
+0.1
+0.0
+0.1
-0.5
lb
LB
-0.8
-0.0
+0.1
+0.1
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.6
-0.1
-0.1
+0.2
-0.3
stress
Polymyxin B sulfate 0.00005 mg/ml
-1.1
+0.1
+0.2
+0.1
-0.2
stress
Aluminum chloride
-0.3
-0.2
+0.4
-0.1
-0.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
-0.5
-0.0
+0.1
-0.4
pH
LB, pH8
-0.4
+0.0
-0.1
+0.2
-0.5
stress
Thallium(I) acetate 0.001 mg/ml
-0.4
-0.1
+0.4
-0.0
-0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.4
-0.5
+0.5
+0.1
-0.1
stress
Nickel (II) chloride 1 mM
-0.7
+0.2
+0.1
-0.3
+0.4
lb
LB
-0.5
+0.1
+0.2
+0.2
-0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.6
+0.2
+0.2
+0.2
-0.2
nutrient
Min media with glucose
+0.5
+0.1
+0.0
-0.1
-0.7
nitrogen source
Cytosine (N)
+0.5
-0.0
+0.2
-0.3
-0.3
r2a control
R2A control
+0.6
-0.1
+0.1
+0.0
-0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.4
+0.3
+0.1
-0.2
+0.4
nitrogen source
L-Histidine (N)
+0.3
-0.3
+0.5
-0.0
+0.1
carbon source
L-Lysine (C)
+0.5
-0.1
+0.2
-0.0
+0.4
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