Fitness for 5 genes in Sinorhizobium meliloti 1021

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 243 experiments or choose conditions or try the comparative fitness browser

500 ntSM_b21218 and SM_b21219 are separated by 2 nucleotidesSM_b21219 and SM_b21220 overlap by 1 nucleotidesSM_b21220 and SM_b21221 are separated by 242 nucleotidesSM_b21221 and SM_b21222 are separated by 224 nucleotides SM_b21218: SM_b21218 - glucosamine-6-phosphate deaminase, isomerizing (EC 3.5.99.6) (from data), at 780,746 to 781,765 _b21218 SM_b21219: SM_b21219 - ABC transporter for D-Glucosamine, permease component 1 (from data), at 781,768 to 782,613 _b21219 SM_b21220: SM_b21220 - ABC transporter for D-Glucosamine, permease component 2 (from data), at 782,613 to 783,494 _b21220 SM_b21221: SM_b21221 - ABC transporter for D-Glucosamine, periplasmic substrate-binding protein (from data), at 783,737 to 784,975 _b21221 SM_b21222: SM_b21222 - transcriptional regulator, at 785,200 to 786,429 _b21222
Group Condition SM_b21218 SM_b21219 SM_b21220 SM_b21221 SM_b21222
nitrogen source D-Glucosamine Hydrochloride (N) -3.1 -3.5 -2.6 -2.6 +2.7
carbon source D-Glucosamine Hydrochloride (C) -1.2 -0.8 -0.3 -0.6 +0.9
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 -0.2 +0.0 -0.0 -1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.4 -0.3 +0.2 -0.0 -0.0
nitrogen source L-Arginine (N) +0.0 -0.2 -0.2 -0.0 -1.1
stress Sisomicin 0.004 mg/ml -0.6 -0.1 +0.1 -0.2 -0.6
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) -0.5 -0.3 -0.2 -0.0 -0.4
carbon source Lactitol (C) -0.5 +0.1 -0.4 +0.1 -0.6
stress Cisplatin 0.001 mg/ml -1.1 -0.1 +0.2 -0.0 -0.3
nutrient L-Histidine -0.6 +0.1 -0.1 -0.1 -0.4
carbon source methyl-beta-D-xylopyranoside (C) -0.5 -0.1 -0.3 -0.0 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.1 -0.2 -0.0 +0.2 +0.1
pH LB, pH6 -0.7 +0.1 +0.0 +0.1 -0.5
lb LB -0.8 -0.0 +0.1 +0.1 -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 -0.1 -0.1 +0.2 -0.3
stress Polymyxin B sulfate 0.00005 mg/ml -1.1 +0.1 +0.2 +0.1 -0.2
stress Aluminum chloride -0.3 -0.2 +0.4 -0.1 -0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 -0.5 -0.0 +0.1 -0.4
pH LB, pH8 -0.4 +0.0 -0.1 +0.2 -0.5
stress Thallium(I) acetate 0.001 mg/ml -0.4 -0.1 +0.4 -0.0 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -0.5 +0.5 +0.1 -0.1
stress Nickel (II) chloride 1 mM -0.7 +0.2 +0.1 -0.3 +0.4
lb LB -0.5 +0.1 +0.2 +0.2 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 +0.2 +0.2 +0.2 -0.2
nutrient Min media with glucose +0.5 +0.1 +0.0 -0.1 -0.7
nitrogen source Cytosine (N) +0.5 -0.0 +0.2 -0.3 -0.3
r2a control R2A control +0.6 -0.1 +0.1 +0.0 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.4 +0.3 +0.1 -0.2 +0.4
nitrogen source L-Histidine (N) +0.3 -0.3 +0.5 -0.0 +0.1
carbon source L-Lysine (C) +0.5 -0.1 +0.2 -0.0 +0.4
remove
SM_b21218
plot
remove
SM_b21219
plot
remove
SM_b21220
remove
SM_b21221
plot
remove
SM_b21222
plot