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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b21187 and SM_b21188 are separated by 343 nucleotides
SM_b21188 and SM_b21189 are separated by 17 nucleotides
SM_b21189 and SM_b21190 are separated by 1 nucleotides
SM_b21190 and SM_b21191 are separated by 9 nucleotides
SM_b21187: SM_b21187 - LacI family transcriptional regulator, at 936,834 to 937,664
_b21187
SM_b21188: SM_b21188 - acyltransferase, at 938,008 to 939,141
_b21188
SM_b21189: SM_b21189 - glycosyltransferase, at 939,159 to 940,262
_b21189
SM_b21190: SM_b21190 - glycosyltransferase, at 940,264 to 941,301
_b21190
SM_b21191: SM_b21191 - surface saccharide ABC transporter ATP-binding/membrane spanning protein, at 941,311 to 943,104
_b21191
Group
Condition
SM
_b21187
SM
_b21188
SM
_b21189
SM
_b21190
SM
_b21191
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.7
+0.4
-0.0
-0.3
-1.7
stress
Aluminum chloride
-0.3
+0.0
-0.1
-0.1
-1.4
nitrogen source
Cytosine (N)
-0.3
-0.3
+0.5
-0.2
-1.5
nitrogen source
L-Arginine (N)
-0.3
-0.1
+0.2
-0.5
-0.9
nitrogen source
L-Leucine (N)
-0.9
-0.0
+0.3
-0.1
-0.9
nitrogen source
L-Serine (N)
-0.3
-0.2
+0.1
-0.1
-1.1
nitrogen source
L-Asparagine (N)
-0.2
+0.4
-0.2
-0.3
-1.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
-0.4
-0.3
+0.0
-0.8
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.0
+0.3
-0.5
-0.4
-0.7
nitrogen source
Uridine (N)
-0.5
-0.2
+0.4
+0.0
-1.0
nitrogen source
L-Histidine (N)
-0.3
-0.1
+0.5
-0.3
-1.0
stress
Cisplatin 0.0005 mg/ml
-0.4
-0.5
+0.1
-0.2
-0.1
stress
Chlorite 0.1 mM
-0.5
+0.2
-0.1
+0.2
-0.9
stress
copper (II) chloride 1 mM
-0.6
-0.2
+0.2
+0.1
-0.5
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.3
-0.4
-0.5
-0.0
-0.4
nitrogen source
nitrate (N)
-0.1
+0.3
+0.5
-0.2
-1.3
r2a control
R2A control for volatile experiments
+0.2
+0.3
-0.3
-0.1
-0.8
nitrogen source
NAG (N)
-0.6
+0.1
+0.2
+0.1
-0.5
stress
nitrate 40 mM
-0.6
-0.2
-0.3
+0.2
+0.3
nitrogen source
Gly-DL-Asp (N)
-0.1
-0.0
+0.5
-0.0
-0.7
pH
LB, pH6
-0.2
+0.1
-0.5
-0.3
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.3
+0.0
-0.3
+0.2
-0.7
stress
Nickel (II) chloride 1 mM
-0.7
-0.0
+0.1
-0.1
+0.4
carbon source
5-Aminovaleric (C)
-0.5
+0.2
-0.1
+0.2
+0.3
carbon source
5-Aminovaleric (C)
-0.5
+0.2
+0.2
+0.2
+0.2
carbon source
L-Lysine (C)
+0.2
+0.2
-0.3
+0.3
+0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
+0.2
+0.4
-0.2
+0.3
carbon source
D-Mannose (C)
+0.4
+0.4
+0.1
+0.3
+0.1
carbon source
D-Xylose (C)
+0.1
+0.5
+0.0
+0.4
+0.3
carbon source
pipercolic (C)
+0.6
+0.2
+0.1
+0.2
+0.4
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