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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b21159 and SM_b21160 are separated by 24 nucleotides
SM_b21160 and SM_b21161 are separated by 8 nucleotides
SM_b21161 and SM_b21162 are separated by 73 nucleotides
SM_b21162 and SM_b21163 are separated by 197 nucleotides
SM_b21159: SM_b21159 - short-chain dehydrogenase, at 902,521 to 903,297
_b21159
SM_b21160: SM_b21160 - beta-N-acetylhexosaminidase, at 903,322 to 905,241
_b21160
SM_b21161: SM_b21161 - hypothetical protein, at 905,250 to 906,683
_b21161
SM_b21162: SM_b21162 - integral membrane transporter protein, at 906,757 to 907,971
_b21162
SM_b21163: SM_b21163 - Urocanate hydratase (EC 4.2.1.49)
(from data)
, at 908,169 to 909,842
_b21163
Group
Condition
SM
_b21159
SM
_b21160
SM
_b21161
SM
_b21162
SM
_b21163
carbon source
L-Histidine (C)
+0.1
-0.0
+0.3
-0.0
-5.4
nutrient
L-Histidine
-0.1
-0.0
-0.2
+0.1
-1.6
nitrogen source
L-Histidine (N)
+0.7
-0.0
-0.2
-0.2
-2.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.6
-0.0
+0.0
+0.1
-0.8
nutrient
L-Histidine
+0.2
-0.1
-0.0
-0.0
-1.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.6
-0.1
+0.1
-0.1
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.8
-0.2
+0.2
-0.1
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.7
-0.1
-0.1
+0.0
-0.3
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
-0.8
+0.0
-0.0
-0.1
-0.2
stress
Thallium(I) acetate 0.0025 mg/ml
-0.7
+0.0
-0.2
-0.3
+0.3
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.9
-0.1
-0.0
+0.1
+0.0
carbon source
D-Mannose (C)
-0.5
+0.0
+0.2
-0.0
-0.3
pH
LB, pH8
-0.3
+0.2
+0.1
+0.0
-0.6
r2a control
R2A control for volatile experiments
-0.6
+0.3
-0.2
-0.0
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.6
+0.1
+0.6
+0.1
-0.5
stress
nitrate 40 mM
-0.6
-0.0
-0.2
+0.1
+0.4
r2a control
R2A control for volatile experiments
-0.6
+0.2
+0.2
+0.1
-0.1
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.4
-0.1
+0.1
-0.0
-0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.5
-0.0
-0.3
+0.1
-0.4
stress
Chlorite 0.1 mM
-0.1
-0.1
-0.2
-0.2
+0.5
stress
D-Cycloserine 0.05 mg/ml
-0.3
-0.0
+0.2
-0.1
+0.5
nitrogen source
L-Asparagine (N)
+0.6
-0.2
-0.4
+0.1
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.8
-0.3
+0.0
+0.2
-0.3
stress
Thallium(I) acetate 0.001 mg/ml
+0.5
-0.0
-0.3
+0.1
+0.1
pH
LB, pH6
-0.3
-0.0
-0.1
+0.1
+1.0
carbon source
D-Glucose (C)
+0.6
-0.1
-0.1
+0.3
+0.0
stress
copper (II) chloride 1 mM
+0.4
+0.2
-0.0
-0.1
+0.4
carbon source
D-Xylose (C)
+0.7
+0.1
+0.2
-0.0
-0.1
carbon source
Fumarate (C)
+0.8
+0.1
+0.1
+0.1
+0.0
pH
LB, pH6
+0.0
-0.1
+0.3
-0.0
+1.0
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