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Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b21137 and SM_b21138 are separated by 13 nucleotides
SM_b21138 and SM_b21139 are separated by 36 nucleotides
SM_b21139 and SM_b21140 overlap by 4 nucleotides
SM_b21140 and SM_b21216 are separated by 41 nucleotides
SM_b21137: SM_b21137 - amino acid ABC transporter permease, at 775,970 to 776,629
_b21137
SM_b21138: SM_b21138 - amino acid ABC transporter ATP-binding protein, at 776,643 to 777,410
_b21138
SM_b21139: SM_b21139 - translation initiation inhibitors, at 777,447 to 777,830
_b21139
SM_b21140: SM_b21140 - transcriptional regulator, at 777,827 to 778,687
_b21140
SM_b21216: SM_b21216 - ABC transporter for D-Glucosamine, ATPase component
(from data)
, at 778,729 to 779,811
_b21216
Group
Condition
SM
_b21137
SM
_b21138
SM
_b21139
SM
_b21140
SM
_b21216
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.0
-0.6
-0.2
+0.2
-3.3
nitrogen source
L-Arginine (N)
+0.1
-0.3
-0.5
-0.8
-0.5
stress
Sisomicin 0.004 mg/ml
-0.0
-0.7
-0.2
-0.3
-0.5
carbon source
Lactitol (C)
-0.2
-0.6
-0.3
-0.7
+0.0
stress
Thallium(I) acetate 0.001 mg/ml
-0.0
-0.8
+0.3
-0.8
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
-0.6
+0.2
-1.1
-0.1
nitrogen source
L-Leucine (N)
-0.5
+0.2
-0.1
-1.0
+0.0
stress
Paraquat dichloride 0.2 mg/ml
+0.2
-0.3
-0.5
-0.2
-0.4
temperature
LB, 23C
-0.1
-0.6
-0.4
-0.3
+0.1
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.1
-0.1
-0.1
-0.5
-0.4
stress
A22 0.02 mg/ml
-0.2
-0.3
-0.1
-0.6
+0.0
lb
LB
+0.1
-0.5
-0.3
-0.5
+0.0
stress
Cisplatin 0.0005 mg/ml
+0.2
-0.3
+0.1
-0.8
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
-0.3
+0.1
-0.7
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
+0.3
+0.0
-1.0
+0.1
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.4
-0.1
-0.1
-0.6
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.4
-0.2
-0.3
-0.4
-0.1
lb no stress control
LB no stress control
-0.1
+0.2
-0.5
-0.3
+0.1
nitrogen source
Cytosine (N)
+0.2
-0.2
+0.2
-0.8
+0.1
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
-0.0
-0.1
+0.4
-0.7
-0.0
stress
Nickel (II) chloride 1 mM
+0.2
-0.5
+0.2
-0.3
-0.1
nitrogen source
Gly-DL-Asp (N)
+0.0
+0.1
-0.6
+0.2
-0.3
stress
Paraquat dichloride 0.3 mg/ml
+0.2
-0.3
+0.3
-0.4
-0.1
r2a control
R2A control
+0.2
-0.3
-0.2
-0.1
+0.3
carbon source
Lactitol (C)
+0.1
+0.5
-0.2
-0.5
+0.2
carbon source
Fumarate (C)
+0.2
-0.4
-0.1
+0.1
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
-0.2
-0.3
+0.4
+0.3
carbon source
L-Alanine (C)
-0.0
-0.2
-0.0
+0.8
+0.2
carbon source
D-Glucosamine Hydrochloride (C)
-0.2
-0.0
+0.1
+1.2
-0.2
carbon source
L-Alanine (C)
+0.2
-0.0
+0.1
+0.7
+0.2
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