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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b21076 and SM_b21077 are separated by 149 nucleotides
SM_b21077 and SM_b21078 overlap by 2 nucleotides
SM_b21078 and SM_b21079 are separated by 428 nucleotides
SM_b21079 and SM_b21080 are separated by 300 nucleotides
SM_b21076: SM_b21076 - glycosyltransferase, at 713,304 to 714,437
_b21076
SM_b21077: SM_b21077 - hypothetical protein, at 714,587 to 714,877
_b21077
SM_b21078: SM_b21078 - glycosyltransferase, at 714,876 to 716,084
_b21078
SM_b21079: SM_b21079 - transcriptional regulator, at 716,513 to 717,244
_b21079
SM_b21080: SM_b21080 - response regulator protein, at 717,545 to 718,369
_b21080
Group
Condition
SM
_b21076
SM
_b21077
SM
_b21078
SM
_b21079
SM
_b21080
r2a control
R2A control for volatile experiments
+0.1
-0.3
-0.1
-0.5
-0.2
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.1
-0.4
-0.1
-0.1
-0.1
r2a control
R2A control for volatile experiments
-0.3
-0.2
-0.0
-0.4
+0.1
stress
Cisplatin 0.0005 mg/ml
-0.2
-0.2
+0.0
-0.5
+0.0
nitrogen source
L-Glutamine (N)
-0.1
-0.4
-0.3
+0.0
+0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
-0.4
+0.3
-0.7
+0.2
stress
perchlorate 10 mM
-0.2
-0.0
-0.3
+0.2
-0.1
stress
Aluminum chloride
+0.1
+0.3
-0.2
-0.2
-0.2
stress
Thallium(I) acetate 0.001 mg/ml
+0.0
-0.3
+0.1
-0.4
+0.2
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.1
+0.3
-0.1
-0.6
+0.0
lb no stress control
LB no stress control
-0.1
-0.2
+0.2
-0.2
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
-0.3
-0.0
+0.4
-0.1
nitrogen source
Gly-DL-Asp (N)
-0.2
-0.2
+0.2
+0.1
+0.2
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
+0.4
+0.2
-0.1
-0.3
+0.0
lb no stress control
LB no stress control
+0.2
+0.4
+0.0
-0.1
-0.2
stress
nitrate 40 mM
-0.4
+0.3
+0.1
-0.3
+0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
-0.1
+0.3
+0.2
+0.2
stress
Nickel (II) chloride 1 mM
-0.3
+0.6
-0.0
+0.0
+0.2
stress
1-octen-3-ol 0.4933903333 mM
+0.1
+0.2
+0.2
-0.2
+0.2
stress
Paraquat dichloride 0.2 mg/ml
-0.2
+0.2
+0.2
-0.1
+0.3
stress
D-Cycloserine 0.05 mg/ml
+0.1
+0.2
+0.1
+0.2
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
+0.4
-0.3
+0.1
+0.3
stress
copper (II) chloride 1 mM
-0.1
+0.2
+0.1
-0.1
+0.5
dmso control
DMSO control
+0.2
+0.4
+0.2
-0.1
+0.1
carbon source
D-Trehalose (C)
+0.0
+0.1
+0.1
+0.4
+0.1
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
+0.2
+0.0
+0.2
+0.2
+0.3
lb no stress control
LB no stress control
+0.1
+0.2
+0.2
+0.3
+0.1
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.1
+0.0
+0.0
+0.7
+0.1
stress
3-octanone 2.655166667 mM
+0.3
+0.2
+0.2
+0.0
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.2
+0.1
+0.5
+0.2
+0.1
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