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Protein
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Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b21016 and SM_b21017 are separated by 2 nucleotides
SM_b21017 and SM_b21018 overlap by 4 nucleotides
SM_b21018 and SM_b21019 overlap by 8 nucleotides
SM_b21019 and SM_b21021 are separated by 225 nucleotides
SM_b21016: SM_b21016 - sugar ABC transporter substrate-binding protein, at 639,364 to 640,395
_b21016
SM_b21017: SM_b21017 - sugar ABC transporter permease, at 640,398 to 641,411
_b21017
SM_b21018: SM_b21018 - sugar ABC transporter permease, at 641,408 to 642,439
_b21018
SM_b21019: SM_b21019 - sugar ABC transporter ATP-binding protein, at 642,432 to 643,949
_b21019
SM_b21021: SM_b21021 - transcriptional regulator, at 644,175 to 645,122
_b21021
Group
Condition
SM
_b21016
SM
_b21017
SM
_b21018
SM
_b21019
SM
_b21021
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.4
-0.4
-0.2
-0.3
-0.2
nitrogen source
L-Asparagine (N)
-0.0
-0.5
-0.3
-0.6
-0.0
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.0
+0.1
-0.4
-0.0
-0.6
nitrogen source
NAG (N)
-0.0
-0.3
-0.4
+0.1
-0.1
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.0
+0.1
-0.1
-0.1
-0.7
nitrogen source
L-Leucine (N)
-0.0
-0.5
+0.2
-0.2
-0.2
carbon source
Methyl beta-D-glucopyranoside (C)
-0.1
+0.4
-0.1
-0.1
-0.5
nitrogen source
Gly-DL-Asp (N)
+0.1
-0.2
+0.2
-0.2
-0.3
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.0
+0.2
-0.1
+0.1
-0.6
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.1
+0.1
-0.0
+0.1
-0.6
dmso control
DMSO control
-0.1
-0.2
+0.5
-0.0
-0.6
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.0
+0.2
+0.1
+0.1
-0.6
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
+0.1
+0.0
-0.1
+0.2
-0.5
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.1
+0.2
+0.1
-0.1
-0.4
nitrogen source
Cytosine (N)
+0.2
-0.2
-0.3
+0.3
-0.3
carbon source
acetate (C)
+0.1
+0.2
+0.2
-0.1
-0.5
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.1
+0.2
+0.2
+0.1
-0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
-0.3
+0.1
-0.2
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
-0.3
+0.4
-0.1
-0.1
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
+0.2
+0.1
+0.3
-0.1
-0.6
stress
D-Cycloserine 0.05 mg/ml
+0.1
-0.1
-0.3
-0.1
+0.4
stress
perchlorate 10 mM
+0.2
-0.5
-0.0
+0.2
+0.3
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
+0.1
+0.3
+0.1
-0.0
-0.4
stress
Paraquat dichloride 0.2 mg/ml
+0.1
-0.3
-0.3
+0.1
+0.5
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.1
-0.4
+0.5
+0.2
+0.2
stress
Chlorite 0.1 mM
+0.1
+0.2
+0.3
-0.2
+0.4
stress
Cisplatin 0.001 mg/ml
-0.0
-0.3
+0.5
+0.1
+0.6
stress
Sisomicin 0.004 mg/ml
+0.0
+0.1
+0.4
+0.2
+0.4
carbon source
D-Ribose (C)
+0.1
-0.0
+0.1
+0.2
+0.7
carbon source
D-Ribose (C)
+0.1
+0.1
+0.2
+0.1
+0.8
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