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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b21013 and SM_b21014 are separated by 205 nucleotides
SM_b21014 and SM_b21015 are separated by 372 nucleotides
SM_b21015 and SM_b21016 are separated by 64 nucleotides
SM_b21016 and SM_b21017 are separated by 2 nucleotides
SM_b21013: SM_b21013 - hypothetical protein, at 636,623 to 637,090
_b21013
SM_b21014: SM_b21014 - hypothetical protein, at 637,296 to 637,676
_b21014
SM_b21015: SM_b21015 - short-chain dehydrogenase, at 638,049 to 639,299
_b21015
SM_b21016: SM_b21016 - sugar ABC transporter substrate-binding protein, at 639,364 to 640,395
_b21016
SM_b21017: SM_b21017 - sugar ABC transporter permease, at 640,398 to 641,411
_b21017
Group
Condition
SM
_b21013
SM
_b21014
SM
_b21015
SM
_b21016
SM
_b21017
stress
6-Pentyl-2H-pyran-2-one 0.4557668333 mM
-0.5
-0.4
-0.0
-0.2
-0.1
lb no stress control
LB no stress control
-0.8
+0.1
-0.2
-0.1
-0.1
r2a control
R2A control for volatile experiments
-0.7
-0.2
-0.1
-0.0
-0.1
stress
1-octen-3-ol 0.4933903333 mM
-0.6
-0.1
-0.2
+0.0
-0.2
dmso control
DMSO control
-0.7
+0.0
-0.1
-0.1
+0.0
nitrogen source
L-Leucine (N)
+0.1
-0.4
+0.1
-0.0
-0.5
stress
1-octen-3-ol 0.4933903333 mM
-0.5
+0.2
-0.2
-0.2
-0.1
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.4
-0.3
-0.1
+0.1
+0.1
r2a control
R2A control for volatile experiments
-0.4
-0.3
+0.1
-0.1
+0.1
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.0
+0.4
-0.3
-0.4
-0.3
nitrogen source
NAG (N)
+0.5
-0.4
-0.1
-0.0
-0.3
stress
copper (II) chloride 1 mM
+0.4
-0.8
-0.1
+0.0
+0.1
nitrogen source
L-Asparagine (N)
+0.3
-0.0
-0.2
-0.0
-0.5
carbon source
methyl-beta-D-xylopyranoside (C)
-0.6
-0.1
+0.3
+0.0
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.3
-0.0
+0.2
+0.1
-0.3
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.4
+0.2
-0.1
-0.4
-0.4
nitrogen source
L-Arginine (N)
+0.2
-0.2
-0.2
+0.2
-0.2
stress
Cisplatin 0.001 mg/ml
+0.6
-0.1
-0.2
-0.0
-0.3
nitrogen source
Cytosine (N)
+0.6
-0.2
-0.4
+0.2
-0.2
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.4
-0.2
+0.1
+0.1
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.4
+0.5
+0.3
-0.0
-0.2
stress
nitrate 40 mM
+0.5
-0.1
+0.0
-0.3
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
+0.4
-0.0
-0.3
+0.2
stress
Paraquat dichloride 0.2 mg/ml
+0.1
+0.5
-0.1
+0.1
-0.3
nitrogen source
L-Serine (N)
+0.5
+0.1
+0.1
+0.1
-0.4
carbon source
Protocatechuic Acid (C)
-0.4
+0.4
+0.1
+0.0
+0.3
nitrogen source
L-Histidine (N)
+0.5
-0.2
+0.1
+0.1
+0.0
carbon source
L-Lysine (C)
+0.3
+0.4
+0.2
-0.1
-0.0
carbon source
D-Mannitol (C)
+0.4
+0.4
-0.0
-0.0
+0.1
nitrogen source
Uridine (N)
+0.6
+0.3
+0.2
+0.0
-0.1
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