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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b21009 and SM_b21010 are separated by 299 nucleotides
SM_b21010 and SM_b21011 are separated by 43 nucleotides
SM_b21011 and SM_b20846 are separated by 207 nucleotides
SM_b20846 and SM_b21676 are separated by 266 nucleotides
SM_b21009: SM_b21009 - Glycerol kinase (EC 2.7.1.30)
(from data)
, at 1,242,315 to 1,243,808
_b21009
SM_b21010: SM_b21010 - D-beta-hydroxybutyrate dehydrogenase, at 1,244,108 to 1,244,884
_b21010
SM_b21011: SM_b21011 - xanthine dehydrogenase, at 1,244,928 to 1,246,415
_b21011
SM_b20846: SM_b20846 - xanthine dehydrogenase, at 1,246,623 to 1,248,959
_b20846
SM_b21676: SM_b21676 - hypothetical protein, at 1,249,226 to 1,249,519
_b21676
Group
Condition
SM
_b21009
SM
_b21010
SM
_b21011
SM
_b20846
SM
_b21676
carbon source
Glycerol (C)
-2.5
-0.0
-0.1
+0.0
+0.3
carbon source
pipercolic (C)
-0.0
-0.8
-0.2
-0.0
-0.3
carbon source
pipercolic (C)
-0.2
-0.7
-0.0
-0.1
-0.3
stress
copper (II) chloride 1 mM
-0.4
+0.0
-0.4
-0.0
-0.3
stress
copper (II) chloride 1 mM
+0.1
-0.2
+0.0
-0.3
-0.6
nitrogen source
nitrate (N)
+0.3
-0.7
-0.2
+0.1
-0.4
stress
D-Cycloserine 0.05 mg/ml
+0.1
+0.1
-0.3
-0.3
-0.4
carbon source
Lactitol (C)
+0.2
-0.6
-0.2
-0.1
-0.1
nitrogen source
Cytosine (N)
-0.2
-0.8
-0.1
+0.1
+0.3
nitrogen source
Gly-DL-Asp (N)
-0.2
-0.4
-0.2
+0.2
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
-0.5
+0.2
-0.0
+0.2
carbon source
L-Histidine (C)
+0.1
-0.6
-0.2
+0.1
+0.3
stress
perchlorate 10 mM
+0.3
+0.2
-0.1
-0.1
-0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.3
-0.4
-0.4
+0.2
+0.6
stress
Thallium(I) acetate 0.001 mg/ml
+0.2
-0.3
-0.4
-0.0
+0.3
carbon source
Uridine (C)
+0.3
-0.5
-0.3
+0.1
+0.3
carbon source
Lactitol (C)
+0.4
-0.6
-0.1
-0.0
+0.3
carbon source
D-Mannose (C)
+0.1
-0.3
-0.2
+0.2
+0.2
stress
Sisomicin 0.004 mg/ml
+0.6
-0.1
-0.1
-0.1
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
+0.3
-0.3
-0.2
+0.3
stress
Cisplatin 0.001 mg/ml
+0.5
+0.1
-0.1
+0.1
-0.4
stress
Thallium(I) acetate 0.0025 mg/ml
+0.3
+0.2
-0.5
-0.1
+0.3
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.4
+0.5
-0.1
-0.0
-0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
+0.7
-0.3
+0.1
-0.2
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
+0.4
-0.4
+0.2
+0.2
+0.2
stress
Paraquat dichloride 0.2 mg/ml
+0.2
+0.2
-0.2
+0.0
+0.5
stress
Chlorite 0.1 mM
+0.1
+0.2
+0.2
-0.1
+0.6
stress
nitrate 40 mM
+0.3
+0.6
-0.1
+0.1
+0.2
stress
Nickel (II) chloride 1 mM
-0.8
-0.1
-0.3
+0.0
+2.3
stress
Fusidic 0.0001 mg/ml
+1.1
+0.3
+0.2
+0.1
-0.1
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