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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20996 and SM_b20997 are separated by 85 nucleotides
SM_b20997 and SM_b20998 are separated by 159 nucleotides
SM_b20998 and SM_b20999 are separated by 9 nucleotides
SM_b20999 and SM_b21000 are separated by 152 nucleotides
SM_b20996: SM_b20996 - hypothetical protein, at 1,232,629 to 1,233,297
_b20996
SM_b20997: SM_b20997 - nitrate reductase, at 1,233,383 to 1,233,967
_b20997
SM_b20998: SM_b20998 - hypothetical protein, at 1,234,127 to 1,235,131
_b20998
SM_b20999: SM_b20999 - transporter, at 1,235,141 to 1,236,403
_b20999
SM_b21000: SM_b21000 - transporter, at 1,236,556 to 1,237,689
_b21000
Group
Condition
SM
_b20996
SM
_b20997
SM
_b20998
SM
_b20999
SM
_b21000
stress
Polymyxin B sulfate 0.00005 mg/ml
N.D.
+0.0
-1.3
N.D.
-0.3
carbon source
Protocatechuic Acid (C)
N.D.
-0.1
+0.0
N.D.
-1.5
nitrogen source
L-Asparagine (N)
N.D.
-0.8
-0.1
N.D.
-0.4
carbon source
Protocatechuic Acid (C)
N.D.
+0.0
+0.0
N.D.
-1.3
stress
Sisomicin 0.004 mg/ml
N.D.
-0.1
-0.9
N.D.
-0.1
stress
Aluminum chloride
N.D.
-0.0
-0.9
N.D.
-0.2
carbon source
D-Fructose (C)
N.D.
-0.2
-0.8
N.D.
-0.1
stress
Fusidic 0.0001 mg/ml
N.D.
+0.0
-1.2
N.D.
+0.2
stress
Thallium(I) acetate 0.001 mg/ml
N.D.
-0.0
-0.9
N.D.
-0.1
stress
Cisplatin 0.001 mg/ml
N.D.
-0.3
-0.6
N.D.
-0.1
nitrogen source
L-Serine (N)
N.D.
-0.1
-0.7
N.D.
-0.2
nitrogen source
Cytosine (N)
N.D.
-0.2
-0.6
N.D.
-0.1
stress
Cobalt chloride 0.16 mM
N.D.
-0.0
-1.0
N.D.
+0.0
nutrient
L-Histidine
N.D.
-0.3
-0.6
N.D.
-0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
-0.6
-0.2
N.D.
-0.1
nitrogen source
nitrate (N)
N.D.
-0.4
-0.3
N.D.
-0.2
stress
Paraquat dichloride 0.3 mg/ml
N.D.
-0.3
-0.7
N.D.
+0.1
nutrient
L-Lysine
N.D.
-0.1
-0.6
N.D.
-0.1
stress
Cisplatin 0.0005 mg/ml
N.D.
-0.2
-0.3
N.D.
-0.3
nutrient
Min media with glucose
N.D.
-0.2
-0.6
N.D.
-0.0
stress
Nickel (II) chloride 0.5 mM
N.D.
-0.0
-0.7
N.D.
-0.1
lb
LB
N.D.
+0.0
-0.7
N.D.
-0.1
lb
LB
N.D.
+0.1
-0.8
N.D.
-0.0
carbon source
D-Galactose (C)
N.D.
+0.1
-0.6
N.D.
-0.2
r2a-hepes control
R2A-HEPES control for volatile experiments
N.D.
-0.2
-0.6
N.D.
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
N.D.
-0.2
-0.4
N.D.
+0.3
nitrogen source
L-Leucine (N)
N.D.
+0.5
-0.7
N.D.
-0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
-0.2
+0.3
N.D.
+0.3
pH
LB, pH6
N.D.
-0.1
+0.8
N.D.
-0.1
pH
LB, pH6
N.D.
-0.2
+0.9
N.D.
-0.2
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