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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20986 and SM_b20987 are separated by 22 nucleotides
SM_b20987 and SM_b20988 are separated by 24 nucleotides
SM_b20988 and SM_b20989 are separated by 531 nucleotides
SM_b20989 and SM_b20990 overlap by 4 nucleotides
SM_b20986: SM_b20986 - Nitrate reductase (EC 1.7.99.4)
(from data)
, at 1,218,112 to 1,220,769
_b20986
SM_b20987: SM_b20987 - siroheme synthase, at 1,220,792 to 1,221,874
_b20987
SM_b20988: SM_b20988 - hypothetical protein, at 1,221,899 to 1,222,384
_b20988
SM_b20989: SM_b20989 - stomatin-like protein, at 1,222,916 to 1,223,686
_b20989
SM_b20990: SM_b20990 - membrane protein necessary for nodulation competitiveness, at 1,223,683 to 1,225,119
_b20990
Group
Condition
SM
_b20986
SM
_b20987
SM
_b20988
SM
_b20989
SM
_b20990
nitrogen source
nitrate (N)
-1.4
-2.7
+0.3
+0.0
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
-1.3
-0.1
-0.2
+0.1
stress
Thallium(I) acetate 0.0025 mg/ml
-0.0
-1.2
+0.1
+0.2
-0.2
nutrient
Min media with glucose
+0.0
-0.5
-0.5
-0.1
-0.1
nitrogen source
L-Leucine (N)
-0.1
-0.4
-0.3
+0.0
-0.3
lb
LB
+0.2
-0.8
-0.3
+0.1
-0.0
stress
Cisplatin 0.001 mg/ml
+0.2
-0.6
-0.3
-0.2
+0.0
pH
LB, pH6
+0.3
-0.6
-0.5
-0.2
+0.1
nitrogen source
Cytosine (N)
-0.1
-0.8
+0.2
+0.0
-0.2
stress
Paraquat dichloride 0.3 mg/ml
+0.2
-0.7
-0.1
+0.0
-0.2
stress
Cisplatin 0.0005 mg/ml
+0.2
-0.7
-0.1
+0.1
-0.1
stress
copper (II) chloride 1 mM
+0.2
-0.5
-0.3
+0.2
-0.1
nitrogen source
L-Arginine (N)
+0.2
-0.3
+0.2
-0.3
-0.2
carbon source
Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
+0.1
+0.3
-0.3
-0.3
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
-0.7
+0.1
+0.1
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
-0.1
-0.5
+0.1
-0.0
stress
Nickel (II) chloride 1 mM
+0.3
-0.3
-0.4
+0.3
-0.0
r2a control
R2A control for volatile experiments
+0.2
-0.6
+0.2
+0.1
+0.0
carbon source
D-Glucose (C)
+0.3
+0.2
-0.2
-0.3
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.0
+0.6
-0.2
+0.1
-0.3
stress
D-Cycloserine 0.05 mg/ml
+0.2
+0.3
-0.6
+0.1
+0.1
stress
3-octanone 0.456 mM
-0.1
+0.3
+0.3
-0.2
-0.2
lb
LB
+0.2
+0.7
-0.2
-0.0
-0.0
stress
Aluminum chloride
-0.0
+0.7
+0.1
-0.1
+0.2
stress
perchlorate 10 mM
+0.4
+0.4
-0.3
+0.4
-0.0
nitrogen source
L-Histidine (N)
-0.0
+0.9
+0.0
+0.1
-0.2
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
-0.0
+0.7
+0.2
+0.2
-0.1
pH
LB, pH6
+0.4
+0.7
-0.2
+0.2
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
+0.4
-0.0
+0.4
-0.1
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.4
+0.7
+0.2
-0.2
+0.1
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