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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20963 and SM_b20964 are separated by 104 nucleotides
SM_b20964 and SM_b20965 are separated by 117 nucleotides
SM_b20965 and SM_b20966 are separated by 108 nucleotides
SM_b20966 and SM_b20967 are separated by 189 nucleotides
SM_b20963: SM_b20963 - transcriptional regulator, at 1,191,952 to 1,192,257
_b20963
SM_b20964: SM_b20964 - Ahp/CTSA family anti-oxidant protein, at 1,192,362 to 1,193,021
_b20964
SM_b20965: SM_b20965 - exported enzyme, 6-aminohexanoate-dimer hydrolase, at 1,193,139 to 1,194,137
_b20965
SM_b20966: SM_b20966 - beta-galactosidase, at 1,194,246 to 1,196,186
_b20966
SM_b20967: SM_b20967 - LacI family transcriptional regulator, at 1,196,376 to 1,197,410
_b20967
Group
Condition
SM
_b20963
SM
_b20964
SM
_b20965
SM
_b20966
SM
_b20967
nitrogen source
Gelatin (N)
-0.0
-0.2
-0.1
-2.2
-0.4
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.1
-0.6
-0.3
-0.1
-0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
-0.6
+0.1
-0.2
-0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.3
-0.9
-0.2
-0.1
+0.3
stress
Chlorite 0.1 mM
-0.5
-0.5
-0.1
+0.2
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
-0.9
-0.0
-0.0
+0.1
nitrogen source
L-Asparagine (N)
-0.6
+0.1
+0.1
-0.0
-0.4
stress
copper (II) chloride 1 mM
-0.5
-0.3
+0.1
+0.1
+0.0
nitrogen source
Uridine (N)
+0.1
-0.8
+0.0
+0.0
-0.0
nitrogen source
NAG (N)
+0.0
-0.7
+0.1
-0.1
+0.1
lb
LB
+0.3
-0.2
-0.1
-0.1
-0.3
nitrogen source
L-Glutamine (N)
+0.3
-0.4
+0.0
+0.0
-0.1
nitrogen source
L-Leucine (N)
-0.5
+0.6
-0.1
-0.0
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.6
+0.5
-0.1
+0.2
+0.1
carbon source
succinate (C)
-0.4
+0.4
+0.2
+0.2
-0.1
carbon source
L-Alanine (C)
-0.3
+0.2
-0.1
+0.2
+0.2
carbon source
acetate (C)
-0.4
+0.4
-0.2
+0.2
+0.1
stress
Cisplatin 0.001 mg/ml
-0.2
+1.0
-0.0
-0.2
-0.2
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.3
-0.0
+0.2
+0.2
-0.3
lb
LB
+0.1
+0.5
+0.1
+0.1
-0.3
stress
perchlorate 10 mM
+0.1
+0.9
-0.2
-0.1
-0.3
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.5
-0.3
+0.2
-0.0
+0.2
carbon source
Fumarate (C)
+0.1
+0.4
-0.2
+0.2
+0.1
carbon source
D-Xylose (C)
+0.4
+0.4
-0.0
-0.1
-0.0
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.3
+0.4
+0.2
-0.1
-0.1
stress
Chloride 200 mM
+0.2
+0.4
+0.1
+0.1
-0.2
carbon source
Myristic (C)
+0.1
+0.5
+0.1
+0.1
-0.2
carbon source
5-Aminovaleric (C)
+0.1
+0.7
+0.0
+0.1
-0.1
r2a control
R2A control for volatile experiments
-0.0
+0.6
+0.2
+0.3
+0.0
nitrogen source
L-Arginine (N)
+0.4
+0.8
+0.3
+0.1
+0.2
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